Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a11
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495...    29   3.7  
04_04_0880 + 29046842-29046990,29047467-29047701,29048132-290482...    29   3.7  
02_05_0073 - 25602268-25603182,25603273-25604190                       29   3.7  
07_03_0455 + 18374327-18374533,18375136-18375482,18375959-183761...    28   5.0  
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472...    28   6.5  
01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820     27   8.7  

>10_01_0003 +
           46158-46428,46588-46706,46819-46928,48977-49415,
           49511-49633,49805-50106,50143-50350,50729-51448
          Length = 763

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +2

Query: 113 VPSVANGDCGRNRPFTAKASGDAVACDLRRKETYDDNFKH---HDKRSRSKNKIPKNVRN 283
           VP++ N     N  F   +S D  +  L  +E  D NFK      +RSR    +    R 
Sbjct: 283 VPNLQNAQSAFNSTFQPGSSVDMESLVLYPQEILDKNFKQVILEAERSRKDAFVELLKRK 342

Query: 284 DLESALVGL 310
           D ES + G+
Sbjct: 343 DTESRVAGV 351


>04_04_0880 +
           29046842-29046990,29047467-29047701,29048132-29048227,
           29048887-29048958,29049091-29049195
          Length = 218

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 408 VWRLT*LTAHMSIQVLHQMYETHPLAHASDFRIAHFL 518
           VWR   +   M IQVL ++YET  + H S     H +
Sbjct: 7   VWRTVFVLLLMEIQVLRRLYETEHVFHYSPSARMHIV 43


>02_05_0073 - 25602268-25603182,25603273-25604190
          Length = 610

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 516 ENEQFGNQMRELGGGSRTSDAAPGSTCEQSVK*AARPSWSPLSGG 382
           + ++ G++ R  GGGSR +  +PG   E  V  A  P+ S   GG
Sbjct: 166 QRKRSGSRERSSGGGSRRASRSPGRRAE-GVSPAPAPAGSGGGGG 209


>07_03_0455 +
           18374327-18374533,18375136-18375482,18375959-18376193,
           18376629-18376724,18377392-18377463,18377596-18377700
          Length = 353

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 408 VWRLT*LTAHMSIQVLHQMYETHPLAHASDFRI 506
           VWR       M +QVL ++YET  + H S  R+
Sbjct: 143 VWRTVFALLLMEVQVLRRLYETEHVFHYSPARM 175


>08_02_0246 +
           14745367-14745372,14745452-14746106,14746299-14747269,
           14748123-14749168,14750669-14751473
          Length = 1160

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 227 KHHDKRSRSKNKIPKNVRNDLESALVGLCDVWF 325
           K H +R  S++++ + +R       VGL  +WF
Sbjct: 477 KLHSRRKASRDRLSEQMRKTFRIEAVGLMSLWF 509


>01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820
          Length = 357

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 389 ESGDHDGLAAHLTDCSHVDPGAASDVRDPPPSSRI*FPNCSFSN 520
           + GD   L   + DC  +  G +SD   PP S  + F   S +N
Sbjct: 145 DDGDKQQLMDDVDDCFAIGGGGSSDSLAPPHSPAVSFDPLSVTN 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,492,703
Number of Sequences: 37544
Number of extensions: 331016
Number of successful extensions: 1081
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)