Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a11
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical ...    29   2.6  
AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z81568-15|CAB04595.2|  610|Caenorhabditis elegans Hypothetical p...    27   7.8  
Z81568-14|CAB04591.2|  608|Caenorhabditis elegans Hypothetical p...    27   7.8  
Z49127-11|CAA88952.2|  452|Caenorhabditis elegans Hypothetical p...    27   7.8  
AL033535-4|CAA22134.2|  452|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical
           protein Y39E4A.2b protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/79 (27%), Positives = 31/79 (39%)
 Frame = +2

Query: 236 DKRSRSKNKIPKNVRNDLESALVGLCDVWFEDIKPHLIRNNIKVHFHGAPPESGDHDGLA 415
           DKR  S + +P N+  D +S       V  + I  H    +   H HG    S  H+   
Sbjct: 16  DKRDSSSSNLPANIEEDTQSVSSSDSGVSADSIDHH-HHGHGHGHSHGGHGHSHTHNNDD 74

Query: 416 AHLTDCSHVDPGAASDVRD 472
           +  +DCS    GA     D
Sbjct: 75  SS-SDCSGAGGGAHKHSHD 92


>AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical
           protein VW02B12L.3 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 507 AHFLITQS*ASSAAQCELCRLLFEAAN 587
           +HF   +  AS AA C+L  LLF A N
Sbjct: 30  SHFTKVEEMASGAAYCQLTHLLFNAIN 56


>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 203 KETYDDNFKHHDKRSRSKNKIPKNVRND 286
           K T+D + K +  RSRS+++ PK  R D
Sbjct: 37  KRTHDRDRKRNRSRSRSRSRSPKRSRRD 64


>Z81568-15|CAB04595.2|  610|Caenorhabditis elegans Hypothetical
           protein K08E3.3b protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 152 PFTAKASGDAVACDLRRKETYDDNFKHHDKRSRSKNKIPKN 274
           PF  +  GD   CD R  ++ D +     K S SKN+I +N
Sbjct: 284 PFEIEDLGDPKNCDSRTNDSADGSGGKLLKSSPSKNRIIRN 324


>Z81568-14|CAB04591.2|  608|Caenorhabditis elegans Hypothetical
           protein K08E3.3a protein.
          Length = 608

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 152 PFTAKASGDAVACDLRRKETYDDNFKHHDKRSRSKNKIPKN 274
           PF  +  GD   CD R  ++ D +     K S SKN+I +N
Sbjct: 284 PFEIEDLGDPKNCDSRTNDSADGSGGKLLKSSPSKNRIIRN 324


>Z49127-11|CAA88952.2|  452|Caenorhabditis elegans Hypothetical
           protein F13D12.9 protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 332 YLRTKRHIGQLKHSPNRFERFWEFYSCSCS--FYHD 231
           +++ K  I ++ + P  F R W+FY C C+  F HD
Sbjct: 405 WMKAKDEIEKM-NLPFGFHRRWQFYFCLCAALFAHD 439


>AL033535-4|CAA22134.2|  452|Caenorhabditis elegans Hypothetical
           protein F13D12.9 protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 332 YLRTKRHIGQLKHSPNRFERFWEFYSCSCS--FYHD 231
           +++ K  I ++ + P  F R W+FY C C+  F HD
Sbjct: 405 WMKAKDEIEKM-NLPFGFHRRWQFYFCLCAALFAHD 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,657,864
Number of Sequences: 27780
Number of extensions: 263607
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)