Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a07
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    61   8e-12
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    51   1e-08
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    48   8e-08
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    42   4e-06
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                40   2e-05
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    37   2e-04
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    37   2e-04
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.68 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.6  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   3.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.4  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 61.3 bits (142), Expect = 8e-12
 Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
 Frame = +3

Query: 285 TIGSGSYATVKVAS-SDRHNCQVAIKIISKFQAPGDYLKKFLPREIEVVKGLKHENLIRF 461
           T+G G +  V++   +   +   A+K + K Q      ++ +  E  ++     + +++ 
Sbjct: 372 TLGVGGFGRVELVQIAGDSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGEADCDFVVKL 431

Query: 462 LQAIETTHRVYIVMEYAENGSLLDIIRKDQHIDETRGRRWFKQLVEAVDYCHERGVVHRD 641
            +  +    +Y++ME    G L  ++R   H D+   R +   +VEA DY H R +++RD
Sbjct: 432 FKTFKDRKYLYMLMEACLGGELWTVLRDKGHFDDGTTRFYTACVVEAFDYLHSRNIIYRD 491

Query: 642 IKCENLLMDHGLNIKL 689
           +K ENLL+D    +KL
Sbjct: 492 LKPENLLLDSQGYVKL 507


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 24/80 (30%), Positives = 44/80 (55%)
 Frame = +3

Query: 450 LIRFLQAIETTHRVYIVMEYAENGSLLDIIRKDQHIDETRGRRWFKQLVEAVDYCHERGV 629
           L++     +T  R+Y VMEY   G L+  I++     E     +  ++   + + H RG+
Sbjct: 47  LVQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQCGKFKEPVAVFYASEIAIGLFFLHGRGI 106

Query: 630 VHRDIKCENLLMDHGLNIKL 689
           V+RD+K +N+L+D   +IK+
Sbjct: 107 VYRDLKLDNVLLDQDGHIKI 126


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 48.0 bits (109), Expect = 8e-08
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 8/149 (5%)
 Frame = +3

Query: 267  GYM-LGRTIGSGSYATV-----KVASSDRHNCQVAIKIISKFQAPGDYLKKFLPREIEVV 428
            GY+ +   IG G +  V     K+    R    VAIK +    A  D  +     E  ++
Sbjct: 631  GYITIEAIIGGGEFGDVCRGKLKLPPDGRTEIDVAIKTLKPGSA--DKARNDFLTEASIM 688

Query: 429  KGLKHENLIRFLQAIET-THRVYIVMEYAENGSLLDIIR-KDQHIDETRGRRWFKQLVEA 602
               +H N+I FLQ + T ++ V I+ E+ ENGSL   +R  D      +     + +   
Sbjct: 689  GQFEHPNVI-FLQGVVTKSNPVMIITEFMENGSLDTFLRANDGKFQVLQLVGMLRGIASG 747

Query: 603  VDYCHERGVVHRDIKCENLLMDHGLNIKL 689
            + Y  E   VHRD+   N+L++  L  K+
Sbjct: 748  MQYLAEMNYVHRDLAARNVLVNAALVCKI 776


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +3

Query: 585 KQLVEAVDYCHERGVVHRDIKCENLLM 665
           +Q++E+V +CH  GVVHRD+K ENLL+
Sbjct: 16  QQILESVHHCHHNGVVHRDLKPENLLL 42


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 38/137 (27%), Positives = 57/137 (41%)
 Frame = +3

Query: 279 GRTIGSGSYATVKVASSDRHNCQVAIKIISKFQAPGDYLKKFLPREIEVVKGLKHENLIR 458
           G  +GSG +  V  A       QVA KII       +     L  E +    LKH N+++
Sbjct: 70  GTFLGSGGFGIVYKALYKGE--QVAAKIIQT-----EKYSNMLNSE-KHASFLKHSNIVK 121

Query: 459 FLQAIETTHRVYIVMEYAENGSLLDIIRKDQHIDETRGRRWFKQLVEAVDYCHERGVVHR 638
            L   +      I ME    G+ L     +  + +       K +  A+ +CH  G+VH 
Sbjct: 122 VLMIEQGASLSLITMELC--GTTLQNRLDEAILIKNERICILKSITCALQFCHNAGIVHA 179

Query: 639 DIKCENLLMDHGLNIKL 689
           D+K +N+LM      KL
Sbjct: 180 DVKPKNILMSKNGQPKL 196


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = +3

Query: 531 DIIRKDQHIDETRGRRWFKQL------VEAVDYCHERGVVHRDIKCENLLMD 668
           D + +D +     G  W +++      +E + Y H +G+VHRD+K +N+L+D
Sbjct: 680 DRLSRDLYCGIRAGLSWLERIQIALDVLEGIRYLHSQGLVHRDVKLKNVLLD 731


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = +3

Query: 531 DIIRKDQHIDETRGRRWFKQL------VEAVDYCHERGVVHRDIKCENLLMD 668
           D + +D +     G  W +++      +E + Y H +G+VHRD+K +N+L+D
Sbjct: 718 DRLSRDLYCGIRAGLSWLERIQIALDVLEGIRYLHSQGLVHRDVKLKNVLLD 769


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 178 SARCQQSLRLRYIAVWKPKLKGN*RFLKATVTCLA 282
           S RC  +  LR+  +W+  L    R L AT  C A
Sbjct: 20  SVRCSAASGLRWFEIWRDSLPTKMRELNAT-ACAA 53


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 273 MLGRTIGSGSYATVKVASSDRHN 341
           MLG   G GS  T+ + + DR+N
Sbjct: 130 MLGSLFGCGSIWTMTMIAFDRYN 152


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 273 MLGRTIGSGSYATVKVASSDRHN 341
           MLG   G GS  T+ + + DR+N
Sbjct: 96  MLGSLFGCGSIWTMTMIAFDRYN 118


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 273 MLGRTIGSGSYATVKVASSDRHN 341
           MLG   G GS  T+ + + DR+N
Sbjct: 6   MLGSLFGCGSIWTMTMIAFDRYN 28


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 339 NCQVAIKIISKFQAPGDYLKKFLP 410
           +C   ++   K    GDY++++LP
Sbjct: 428 HCYCPVRFGRKADPNGDYIRRYLP 451


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
          protein.
          Length = 85

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 87 MFTYLNLSFFFWIF 46
          M T LNLS  FW+F
Sbjct: 28 MCTSLNLSNLFWLF 41


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 365 DYFNSNLTIMSVARGHLNSCIGTGPNCSAKHVTVAF 258
           D  N+ +   + +    NSC+G+     +KH T  F
Sbjct: 360 DSMNAVIRNFNESENRRNSCLGSTETYYSKHNTQQF 395


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 150 PDVRTHDNVLGEMSAEPTATVHSGVEAKTERKLTVLESHGYML 278
           P +   DNV+   S      + S   A++E+ L   E+H + L
Sbjct: 704 PRIMDLDNVMCRTSGPRGVAIVSASTARSEQFLCRYEAHCFAL 746


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 533 HYTKRSAHR*DPW 571
           HY K S H+  PW
Sbjct: 323 HYRKPSTHKMAPW 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,682
Number of Sequences: 438
Number of extensions: 3775
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)