Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12a06
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 31 0.84
08_01_1072 + 10954080-10954851,10954956-10955027,10955108-109551... 31 1.1
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 1.5
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811... 30 1.9
04_04_0564 - 26261199-26261508,26261605-26261697,26262150-262622... 29 2.6
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 29 3.4
05_03_0008 + 7332224-7332700,7335136-7335153,7335747-7335848,733... 29 4.5
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719 28 7.8
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027... 28 7.8
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 28 7.8
>04_04_1358 +
32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 360 NDVNESVPETNNSDIVTKEEPFDGIELQANADELDLKLEESNGQNSKEMLAPLPELSKWE 539
N + S+P+ NSDI + + P + +A +L K+ E + + M A P +WE
Sbjct: 551 NSLRISLPKIVNSDIASTQCPTPQSHVDNHARKLVRKILEDSLMKLENMPANNPRTIRWE 610
Query: 540 VDD---ESADKKEGEVMSPKEKA 599
+ ++ KK+ K+ A
Sbjct: 611 LGSSWLQNLQKKDSPASEDKKNA 633
>08_01_1072 +
10954080-10954851,10954956-10955027,10955108-10955191,
10955285-10955353,10955814-10955916,10956033-10956107,
10956204-10956366,10956502-10956571,10956649-10956735,
10956795-10956836,10956904-10956969,10957201-10957275,
10960149-10960271,10960683-10960966
Length = 694
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/70 (37%), Positives = 35/70 (50%)
Frame = +3
Query: 354 VKNDVNESVPETNNSDIVTKEEPFDGIELQANADELDLKLEESNGQNSKEMLAPLPELSK 533
VK V VPETNN D T+EE D EL E +L+ E+ + KE+L +
Sbjct: 152 VKEVVVVEVPETNNLDEETEEEE-DEEEL-----EEELEAEDEEEEEEKEVL----DQDH 201
Query: 534 WEVDDESADK 563
+DD+ A K
Sbjct: 202 MAIDDDEAAK 211
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 339 IIQTYVKNDVNESVPETNN-SDIVTKEEPFDGIELQANADELDLKLEESNGQNSKEMLAP 515
+++T ++DV++ + D + E + E +A +LD+ + E+N N+ + P
Sbjct: 2253 VVETSKQDDVDQDFSIHHQVEDEKSAETENNSAESEAVQPKLDITIAETNNDNNLSTINP 2312
Query: 516 LPELSKWEVDDESADKKEGE 575
LPE D + +++ E
Sbjct: 2313 LPEHETENASDINQNRQYQE 2332
>01_06_1577 -
38379951-38380167,38380349-38380543,38380919-38381191,
38381281-38381455,38381925-38382035,38382120-38382390,
38382990-38383139,38383242-38384246
Length = 798
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Frame = +3
Query: 267 TEQKDKVVFDDLYGDEVVGAVDKEIIQTYVKNDVNESVPETNNSDIVTKEEPFD---GIE 437
T+ D V ++ + V + +++ + V+ V S + + ++ FD G
Sbjct: 82 TDNNDNAVPEE--PNNTVPSEEEKFSENTVEKPVESSEEKAPPKEKEESKDTFDDANGKT 139
Query: 438 LQANADELDLKLEESNGQNSKEMLAPLPELSKWEVDDESADKKEGEVMSPKEKADGTKVT 617
Q++A E D E +GQ+ E S+ + DDE +D + + K + G+K T
Sbjct: 140 EQSSAKE-DGDSESGSGQSDGSKNGDDEEKSEEKKDDEQSDGERKDDQEEKAEGSGSKDT 198
Query: 618 SD 623
+D
Sbjct: 199 TD 200
>04_04_0564 -
26261199-26261508,26261605-26261697,26262150-26262295,
26262400-26262720,26263184-26263272,26263466-26263654,
26265546-26265804
Length = 468
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 430 PSKGSSLVTMSELLVSGTDSLTSFLT*VCIISLSTAPTTSSPYKSS 293
PSKG S + L + S T C+ S S++P ++SP +SS
Sbjct: 228 PSKGCSPAVRAFLRAYDDIDIYSIYTPTCLSSSSSSPASASPRRSS 273
>02_04_0157 + 20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +3
Query: 414 EEPFDGIELQANADELDLKLEESNGQNSKEMLAPLPE--LSKWEVDDESA--DKKEGEVM 581
++ +ELQ+N + LK E+ + + E A +PE + V++ +A +K + V
Sbjct: 939 QQKLQELELQSNETKDLLKREQETAKAAWEKAALVPEVQVDTTLVNELTAENEKLKTLVA 998
Query: 582 SPKEKADGTKVTSDVIKRAENAIFAKA 662
S + K D T+ D +K+A + KA
Sbjct: 999 SLETKIDETEQRFDEVKKAREELLKKA 1025
>05_03_0008 +
7332224-7332700,7335136-7335153,7335747-7335848,
7336927-7337202,7337474-7337674
Length = 357
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 411 KEEPFDGIELQANADE-LDLKLEESNGQNSKEMLAPLPELSKWEVDDESADKKEGEVMSP 587
+E+ +G+E++ +E + + EE +GQN ++ E + V+D D GEV+
Sbjct: 76 EEQDEEGMEMEEEEEEEQEQEQEEEDGQNEQQPQEAGEEQDEGAVEDADMD-DAGEVLVG 134
Query: 588 KEKADG 605
E A G
Sbjct: 135 GEDAHG 140
>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
Length = 780
Score = 27.9 bits (59), Expect = 7.8
Identities = 27/100 (27%), Positives = 47/100 (47%)
Frame = +3
Query: 375 SVPETNNSDIVTKEEPFDGIELQANADELDLKLEESNGQNSKEMLAPLPELSKWEVDDES 554
+V +S +V + + +G+E Q A E L L S Q+++E + PELS W +D+
Sbjct: 12 AVTNKASSYLVYQYKVMEGMEQQRKALERMLPLILSVIQDTEEKRSKKPELSAW-LDE-- 68
Query: 555 ADKKEGEVMSPKEKADGTKVTSDVIKRAENAIFAKAIHSL 674
K E + ++ + + K+ +A K I SL
Sbjct: 69 LKKVSYEAIDVFDEFKYEALRREAKKKGHDATLGKGIVSL 108
>05_07_0143 +
28000038-28000211,28002217-28002230,28002713-28002788,
28003304-28003865,28004476-28004761,28004848-28005118,
28005478-28005633,28005871-28006368,28006809-28007093
Length = 773
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 357 KNDVNESVPETNNSDIVTKEEPFDGIELQANADELDLKLEESN 485
KN E E +NSD+ E F G+ L N + + KL E N
Sbjct: 268 KNSHAEDEVEGSNSDVALATENFQGLSLH-NEELVPTKLAEDN 309
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 27.9 bits (59), Expect = 7.8
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Frame = +3
Query: 354 VKNDVNESVPETNNSDIVTKEEPFDGIELQANADELDLKLEESNG----QNSKEMLAPLP 521
V+N V PE S+ + E Q N+D K E S+ Q + + +
Sbjct: 275 VENTVMNQTPEHVASEKLASENSVSFSRKQENSDSFSRKQENSDSFSRKQENSDSFSRKQ 334
Query: 522 ELSKWEVDDESADKKEGEVMSPKEKADGTKVTSDVIKRAENAIFA 656
E S ++D + DK+ ++ S E D + V S V K ++I A
Sbjct: 335 ENSDSQIDRPNNDKEVLDI-SMFESDDESPVASPV-KEVRSSIAA 377
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,211,803
Number of Sequences: 37544
Number of extensions: 203381
Number of successful extensions: 672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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