Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a05
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical pr...    82   3e-16
Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical pr...    50   1e-06
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRN...    29   2.9  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical
           protein T04G9.5 protein.
          Length = 188

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 42/113 (37%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
 Frame = +2

Query: 95  LYFVLFIAAA-VSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 271
           L+ +LF+  + V    +   A +L  KQ L+ Y VENMD +++Y L+NVG  PA +V + 
Sbjct: 5   LFALLFVVVSCVDVGTQTRDAFILAHKQPLSTYAVENMDFVLEYGLYNVGDKPAQKVTID 64

Query: 272 D-NGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTY 427
           D + F  + F +V G L    ++I   +NV+H V +R   +G+FN+++A+VTY
Sbjct: 65  DRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIRPRAFGFFNYTAAQVTY 117


>Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical
           protein K08F4.3 protein.
          Length = 182

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
 Frame = +2

Query: 95  LYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVD 274
           +  V  I +A++A D    A++L+ K  + KY V   +   +Y + N+G +PA++V+L D
Sbjct: 1   MQLVFLILSALAAADAS--AKILIGKSFVTKYPVAQRENAFEYQIINIGLSPALKVELSD 58

Query: 275 -NGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTV 376
              F  D F ++ G  TA    I   + + H + V
Sbjct: 59  LKSFPTDRFEILKGSATASFPVIPANSTIYHHIVV 93


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 242 SAPAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSH 364
           S  A+ V L  NG++  VF V GGQ    + R++    +SH
Sbjct: 633 SGLAILVVLAQNGYNFGVFKVFGGQTLVVLSRLSFGVYLSH 673


>Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical
           protein C25A1.7 protein.
          Length = 970

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 23/76 (30%), Positives = 33/76 (43%)
 Frame = +2

Query: 245 APAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVT 424
           A  VE KLV   F P  ++       AE +    + N  H  T    ++   NFSS++V 
Sbjct: 207 AKLVEQKLVYRSFKPVYWSPSSNTALAESEL---EYNDKHQSTSAYFRFKLINFSSSDVI 263

Query: 425 YKASEDATDVSFFLSI 472
           +  SE +    FF  I
Sbjct: 264 WAHSEPSKISQFFALI 279


>AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 972

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 23/76 (30%), Positives = 33/76 (43%)
 Frame = +2

Query: 245 APAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVT 424
           A  VE KLV   F P  ++       AE +    + N  H  T    ++   NFSS++V 
Sbjct: 207 AKLVEQKLVYRSFKPVYWSPSSNTALAESEL---EYNDKHQSTSAYFRFKLINFSSSDVI 263

Query: 425 YKASEDATDVSFFLSI 472
           +  SE +    FF  I
Sbjct: 264 WAHSEPSKISQFFALI 279


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
            R09E10.7 protein.
          Length = 1717

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 465  RKKLTSVASSLALYVTSAELKLK*PYLLDRTVTTWDTL 352
            R+ L S  S LAL+V+   +  + PY+ DR +  W+T+
Sbjct: 930  RRLLNSTDSDLALHVSLHIIGCR-PYISDRYILHWETI 966


>Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical
           protein K02E2.8a protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 345 GAILSISAVSCPPTTVNTSGWKPLSTSFTST 253
           G I + + +S P TTV  +   P+ST+ T+T
Sbjct: 26  GTITTTTTISAPTTTVPITTTNPVSTTTTTT 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,449,527
Number of Sequences: 27780
Number of extensions: 217670
Number of successful extensions: 548
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)