Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a04
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    77   2e-15
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   3.2  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   4.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.3  
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.6  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   5.6  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   9.9  

>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 2/163 (1%)
 Frame = +3

Query: 183 CGELLNKIKIALT-QLTFLPSNNVAANQKELILARDVLEIGAQWAVAVKDVKAFERYMSQ 359
           C + L K+K+ L  Q  F+P+++    +++   AR+V E G   ++   D+++F RY SQ
Sbjct: 21  CKKELLKLKVELAKQNLFVPTSD----KEKASFARNVFEYGVLVSIQTCDIESFARYASQ 76

Query: 360 LKCYYFDYKDHLPESAFTNQXXXXXXXXXXSQNRVAEFHTELERLP-VDVIRTDLYIRHP 536
           +  +Y D    L  S+              S+NR+AEFHT LE +P   +   D Y+   
Sbjct: 77  VIPFYHD---SLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWV 133

Query: 537 LALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIA 665
           ++LEQ +MEG+++K+     +     +++FM  ++  VR EIA
Sbjct: 134 ISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIA 176


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 207 KIALTQLTFLPSNNVAANQKELILARDVLEIGAQWAVAVKDVKAFERYMSQLKCYYFDYK 386
           K    +L  + +N V+    E I+A     I A + +++KD     + +S + CY  D  
Sbjct: 510 KTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDAS 569

Query: 387 DHL 395
            H+
Sbjct: 570 THI 572


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 105 ATVKDVATLYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTF 233
           A +K V   + NL+  W   P K+ +C   ++ +++ +T+L F
Sbjct: 373 AIMKRVYFRHFNLRERWLHAPEKIKRCSFPIHGVRL-ITKLQF 414


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 111  VKDVATLYQNLKTEWAKKPRKLDKCGELLNKIKIALT 221
            +  VA+    +K +W   P K + C   ++K +  L+
Sbjct: 1125 LSSVASRINQIKCDWVTDPEKFESCTSEISKFRTLLS 1161


>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 501 QLEDAQVLCETRPLGFEKAGIIDSILTVGL 412
           +LEDA    + + +G E+ GII  ++T GL
Sbjct: 21  ELEDALNANQEKKIGLEQMGIIVQLVTEGL 50


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 273 STLFGLL-RHYYLEETLTV*EQSLFCLRALHICPAFLASLPTRSS 142
           S +FG + ++YY+ E     E S+F L   HI P  L +   RSS
Sbjct: 381 SYVFGCIPKNYYMTEVSPQAEDSIFKLMVDHILPEVLVN-ENRSS 424


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 109 VAIILK*N-FLIVKHSSINLEFRLSFCGFKVLNF 11
           +AI L+ N FL+V  +S ++ F   F  F+ +NF
Sbjct: 524 IAIDLRPNEFLVVSPNSYHMGFHQGFSSFESVNF 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,854
Number of Sequences: 5004
Number of extensions: 53883
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)