Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a04
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical pr...    96   2e-20
AF039046-13|AAB94213.1|  551|Caenorhabditis elegans Hypothetical...    29   3.0  
Z46812-5|CAA86847.2|  775|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z37093-7|CAA85468.2|  775|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81587-1|CAB04701.1|  340|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.      28   5.2  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related...    27   9.1  
AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical...    27   9.1  

>Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical
           protein ZK20.5 protein.
          Length = 250

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 2/184 (1%)
 Frame = +3

Query: 120 VATLYQNLKTEWAKKPRKLDKCGELLNKIKIALTQLTFLPSNNVAANQKELILA-RDVLE 296
           ++  ++NL   WAK+P+ L         ++ AL +LT + S +   N K+  LA +D+ E
Sbjct: 1   MSAAHKNLLAVWAKEPKDLVA-------VEKALNELTKVLSASSDLNDKQSALASKDLYE 53

Query: 297 IGAQWAVAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXX-SQNRVAEF 473
           I    A+   D + F+ Y++Q+  YY       PE++               + NR+++F
Sbjct: 54  ISVLLAILKHDFETFDDYINQMHTYY----TMAPENSENKHLMTGLHLMFLLAANRLSDF 109

Query: 474 HTELERLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVR 653
           H  LE++P     ++ YI  P+ +EQ LMEG+YNK+ L + N+P+  YT F+  +L+T+R
Sbjct: 110 HMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIR 169

Query: 654 GEIA 665
            EIA
Sbjct: 170 REIA 173


>AF039046-13|AAB94213.1|  551|Caenorhabditis elegans Hypothetical
           protein R09B5.4 protein.
          Length = 551

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = -3

Query: 238 GRNVNCVRAIFILFKSSPHLSSFLGFFAHSVFRF*YNVATSFTVAIILK*NFLIVKHSSI 59
           G +V     +   F+S   +++ LG F+++ F   Y+VATS  + ++++  F ++   S+
Sbjct: 318 GSSVGLPEFVIGAFRSYGSVTAILGAFSYAFFEKRYSVATSGLLGLVVQQFFAVLAVISV 377

Query: 58  NL 53
            L
Sbjct: 378 FL 379


>Z46812-5|CAA86847.2|  775|Caenorhabditis elegans Hypothetical
           protein ZK669.1a protein.
          Length = 775

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 114 KDVATLYQNLKTEWAKKPRKLDKCGELLNKIKIAL 218
           K+  T+   LK EW K  + L  C E   K KI L
Sbjct: 105 KEHDTVRNALKVEWTKATKSLHDCEESYEKSKITL 139


>Z37093-7|CAA85468.2|  775|Caenorhabditis elegans Hypothetical
           protein ZK669.1a protein.
          Length = 775

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 114 KDVATLYQNLKTEWAKKPRKLDKCGELLNKIKIAL 218
           K+  T+   LK EW K  + L  C E   K KI L
Sbjct: 105 KEHDTVRNALKVEWTKATKSLHDCEESYEKSKITL 139


>Z81587-1|CAB04701.1|  340|Caenorhabditis elegans Hypothetical
           protein T06G6.1 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -3

Query: 346 LSKALTSFTATAHCAPISNTSLAKINSFWFAATLLLGRNV--NCVRAIFIL 200
           L+ ALTS T   +CA IS   L      W A   L   N+  N  R I I+
Sbjct: 19  LASALTSVTLKFNCAFISTIVLISYCFSWLAIQALWNNNIFSNSTRLILIV 69


>Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical
           protein F54F7.5 protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 186 GELLNKIKIALTQLTFLPSNNVAANQKELI 275
           G +LN + I     +F+PSNN A + K L+
Sbjct: 107 GTVLNDVFIVCLDTSFMPSNNSAPSAKRLL 136


>AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 186 GELLNKIKIALTQLTFLPSNNVAANQKELI 275
           G +LN + I     +F+PSNN A + K L+
Sbjct: 107 GTVLNDVFIVCLDTSFMPSNNSAPSAKRLL 136


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 389  PPPGVCIHKPTVRIESIIPAFSKP-SGRVSHRT 484
            PPP V    PT  I +++P  S P SG VS  T
Sbjct: 2205 PPPSVATAGPTGPILTVVPVSSAPTSGAVSSTT 2237


>AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical
           protein T20H9.6 protein.
          Length = 758

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +3

Query: 117 DVATLYQNLKTEWAKKP--RKLDKCGELLNKIKIALTQLTFLPSNNVAANQKELILARDV 290
           D+  ++ NLKT+W  K    + +  G+ L  +K   T  T +  +N +  + E  + +++
Sbjct: 334 DIWNIFDNLKTDWINKTVYGQAEHIGKALQTLK---TVQTNVQDSNESIRRGENDMLKEI 390

Query: 291 LEIGAQWAVAVKDVKAFERYMSQLK 365
            ++ ++    VK  +  E ++  ++
Sbjct: 391 TDVHSKVIRLVKYAETVEPFIGSIE 415


>Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical
           protein F09A5.2 protein.
          Length = 894

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 60  IELCLTIRKFYFKIMATVKDVATLYQNLKTEWAKKPRKLDKCGELLNKIKIA 215
           IELC++I KF  K+   ++     +QN KT+    P + D C  + + + IA
Sbjct: 586 IELCISIYKFKLKLRPNIEISKISFQN-KTD--DCPIEADMCLRIKDLVSIA 634


>U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related
            family protein 6 protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 146  DRVGKEAKKAGQMWRALKQNKDCSYTVNV 232
            +R+   +KKA    R LK+NK+  Y +N+
Sbjct: 948  ERLSDASKKASDRRRKLKENKNSVYAINL 976


>AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical
           protein B0205.4 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
 Frame = -2

Query: 374 IITLELRH---VSLESFDVFHG--DGPLCTY---FQYISS--QNQLFLVCCDIITWKKR- 228
           ++ + +RH   +S+ S +  HG  D P+  Y    Q IS   +N  F++C D + W +R 
Sbjct: 258 MVGVHIRHGMDISMNSRNRIHGHVDTPIEYYKRAIQQISKIYENVAFIICSDNVAWARRN 317

Query: 227 -*LCKSNLYF 201
             L K  L+F
Sbjct: 318 LKLGKETLHF 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,865,990
Number of Sequences: 27780
Number of extensions: 304628
Number of successful extensions: 786
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)