Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a04
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          26   0.37 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      26   0.37 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.65 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.0  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.5  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 543 LEQYLMEGSYNKIFLAKGNVPAESYTFFMD 632
           ++ YL+  +Y   +L K NVP +   +F +
Sbjct: 195 IDYYLLAANYTGWYLTKHNVPEQRLNYFTE 224


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 543 LEQYLMEGSYNKIFLAKGNVPAESYTFFMD 632
           ++ YL+  +Y   +L K NVP +   +F +
Sbjct: 195 IDYYLLAANYTGWYLTKHNVPEQRLNYFTE 224


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 238 GRNVNCVRAIFILFKSSPHLSSFLGFFAHSVF 143
           G+ V+C  +  ILF SSP L+   G     +F
Sbjct: 378 GQMVHCPESDSILFVSSPFLNGLEGLTGRGLF 409


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 603 AHYPLLRIFCCSCPPLNTVLEQAG 532
           AH+ L   F  SC P+   LEQ G
Sbjct: 67  AHHRLYPAFSSSCDPVPGNLEQIG 90


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 45  RNSRLIELCLTIRKFYFKIMATVKDVATLYQNLKTEWAKKPRKLD 179
           + +R + +C  +      +  T   V   +QN +T+W K+   LD
Sbjct: 28  KTTRYLSVCERLN-LALSLSLTETQVKIWFQNRRTKWKKQNPGLD 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,827
Number of Sequences: 438
Number of extensions: 3947
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)