Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a03
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   3.0  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    26   4.0  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   7.0  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    25   7.0  

>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 505 KQTPKSIQQLLQSNGIPQLHQSSLPQKEEKDY 600
           K+  K + + + S  IP+LH+ S+   E +D+
Sbjct: 155 KKLKKDVDERVVSKDIPKLHRDSVESPESQDW 186


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +1

Query: 208 ISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQ 387
           I   V+NN K   +   D+Q+++I PQ       +        I  R++    + + +NQ
Sbjct: 208 IMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQ 267

Query: 388 IH 393
           ++
Sbjct: 268 LY 269


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 202 DLISYDVMNNKKN--DDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAE 369
           D +  D+ N K N  D+ GRS     +I+ QE  IE      +TL        C I+E
Sbjct: 497 DGLQKDLKNTKGNLDDEIGRSAFLKSQIRDQELTIEKLHDSLETLSQTNNSLQCEISE 554


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 503 RNKRQNRYSNSYK-AMAYRSYIKAVYRKKR 589
           R++  NRY NSY+ +   R +    YRK+R
Sbjct: 217 RDRDSNRYRNSYRPSRPQREHSPGNYRKER 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,611
Number of Sequences: 5004
Number of extensions: 42123
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)