Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a03
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314     40   0.001
03_05_0806 + 27846204-27846497,27847309-27847683                       40   0.002
03_01_0073 + 599626-599856,599960-600041,600646-600689,601303-60...    40   0.002
02_01_0692 + 5179778-5181847                                           31   1.0  
03_06_0650 - 35292062-35292079,35292365-35292955                       30   1.3  
01_05_0132 - 18446105-18446197,18446281-18446372,18446684-184467...    30   1.8  
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115...    28   5.4  
11_06_0040 + 19532262-19532910,19533509-19533540                       28   7.2  

>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
          Length = 368

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 14/39 (35%), Positives = 29/39 (74%)
 Frame = +1

Query: 322 DTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 438
           DTL  IA+++   +A++KR+N +  D ++FA +T+++P+
Sbjct: 76  DTLAGIAIKYGVEVADIKRLNGLSTDLQMFAHKTLRIPL 114


>03_05_0806 + 27846204-27846497,27847309-27847683
          Length = 222

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/49 (30%), Positives = 30/49 (61%)
 Frame = +1

Query: 310 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVL 456
           V+ GDT+  IAL++   + ++KR N +  D+ I+ R  + +P++   +L
Sbjct: 82  VRRGDTVPGIALKYSIQVTDIKRFNNMMSDHGIYLRERLLIPISNPEIL 130


>03_01_0073 +
           599626-599856,599960-600041,600646-600689,601303-601411,
           601498-601964
          Length = 310

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/48 (31%), Positives = 33/48 (68%)
 Frame = +1

Query: 295 FIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 438
           +I  +V   DTL  +A+++   +A++KR+N +  D ++FA +T+++P+
Sbjct: 56  YILHRVCRFDTLAGVAIKYGVEVADVKRVNGLTTDLQMFAHKTLRIPL 103


>02_01_0692 + 5179778-5181847
          Length = 689

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 289 EHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 438
           +H +   V  GDT+ AIA RF     E+   N + + + I+   T+ VP+
Sbjct: 200 KHMVTYLVTWGDTVSAIAARFRVDAQEVLDANTLTESSIIYPFTTLLVPL 249


>03_06_0650 - 35292062-35292079,35292365-35292955
          Length = 202

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 397 DNEIFARRTIKVPVTPYSVLTEL 465
           ++E FAR  + V +TP S++TEL
Sbjct: 115 EHEFFARNNLSVDITPQSIMTEL 137


>01_05_0132 -
           18446105-18446197,18446281-18446372,18446684-18446783,
           18446855-18447046,18447216-18447536,18447848-18447943,
           18448006-18448098,18448181-18448306,18448358-18449053,
           18449130-18449162
          Length = 613

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +1

Query: 145 VKVPFFTMKQRTRVMHSGDDLISYDVMNNKKNDDNGRSDIQLYKIKPQEHFI 300
           +K+P    K+ T   HSG D      M+N K       D+QL      EH I
Sbjct: 290 IKLPIEATKEYTTKDHSGTDANQPSNMDNTKAQTTDMVDVQLQLKTMNEHLI 341


>01_06_1097 +
           34507376-34507395,34509380-34511214,34511263-34511598,
           34511800-34513691
          Length = 1360

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 503 EVEGVGSGCSDGINSVKTE 447
           ++  VGS CSDGINSV  E
Sbjct: 648 DLADVGSECSDGINSVDVE 666


>11_06_0040 + 19532262-19532910,19533509-19533540
          Length = 226

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 307 QVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTE 462
           +V+  D +  IA RF    + L +IN I     +   + + VPV  Y V T+
Sbjct: 172 KVRAADNVSKIAARFGVKESTLLKINGITDPKNLTQGQILDVPVPDYIVTTK 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,097,687
Number of Sequences: 37544
Number of extensions: 249481
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)