Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a02
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560...    31   0.62 
09_04_0243 - 15975483-15975704,15976003-15976060,15976875-159772...    29   2.5  
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626...    28   5.8  

>01_05_0343 + 21155237-21155496,21155596-21155842,21155939-21156064,
            21156291-21156428,21156513-21156650,21156756-21157013,
            21157404-21157541,21158023-21158092,21158267-21158480,
            21158614-21158719,21159844-21160077,21160836-21161000,
            21161083-21161232,21161308-21161399,21161631-21161712,
            21161800-21161883,21161980-21162096,21162179-21162289,
            21162698-21162892,21164495-21164575,21165671-21165720,
            21165978-21165990,21166518-21166600,21166693-21166833,
            21166879-21166936,21167023-21167072,21167474-21167582,
            21167666-21167727,21168321-21168363
          Length = 1204

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 373  VLITGSCDKLFISVPIVLSIDLFLYLI-CCIDFCIKCFNVSSLVMMSHGIVG 221
            V I     K+ + + +VL I LFL  I CC+D C++    S + + S  +VG
Sbjct: 1016 VFIPSHYKKVHVQIHLVLLIHLFLLSIACCVDLCMRF--TSDVKIKSISVVG 1065


>09_04_0243 -
           15975483-15975704,15976003-15976060,15976875-15977287,
           15977530-15977538
          Length = 233

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 280 FCIKCFNVSSLVMMSHGIVGKFLHKTFC 197
           FCI CF++    +M+ GI+   +H + C
Sbjct: 122 FCIGCFSIVKEQIMTAGIISYLMHASVC 149


>03_05_0105 -
           20861130-20861384,20861472-20862262,20862364-20862618,
           20862713-20862827,20862959-20863011,20863113-20863373,
           20863699-20863749,20863863-20864114,20864504-20864726,
           20865317-20865460
          Length = 799

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = +3

Query: 45  VELTLLTIMSMQSRAIILRNNGLIHKMVSQFQDKENLSSHDEARDNVVALMQNVLCKNFP 224
           + + L+ +M +     + R    +   VS  + KE L SHD  R   VAL    L +  P
Sbjct: 513 MSVVLMVVMIVWHYVHVKRYKYELEHTVSTDKVKEMLESHDLKRVRGVALFYTELVQGIP 572

Query: 225 TIPCDIITKDETL 263
            I   +I K  T+
Sbjct: 573 PIFPHLIEKIPTI 585


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,490,984
Number of Sequences: 37544
Number of extensions: 294925
Number of successful extensions: 786
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)