Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a02
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.6  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   8.0  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   8.0  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 207 LCKNFPTIPCDIITKDETLKHLXXXXXXXXXXXXRSMDKTIGTD 338
           L K  PT+P D ++K +TLK               +M+ T G D
Sbjct: 276 LRKIIPTLPSDKLSKIQTLKLATRYIDFLFQVLHCNMENTEGAD 319


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 505 YVNFIHTKSNRRTRSMEETNTDILKRNCLCL 597
           YV+ I+ +SN   ++ EE    + KRN +C+
Sbjct: 282 YVSIIYEESNYGIKAFEELEELLGKRN-ICI 311


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = -3

Query: 313 DLFLYLICCIDFCIKCFNVSSLVMMSHGIVGKFLHKTFCM 194
           +LF+ ++C + + I  F ++   M    ++  +    FC+
Sbjct: 416 ELFIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCL 455


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = -3

Query: 313 DLFLYLICCIDFCIKCFNVSSLVMMSHGIVGKFLHKTFCM 194
           +LF+ ++C + + I  F ++   M    ++  +    FC+
Sbjct: 469 ELFIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCL 508


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 156 KDSLYLETVRPFC 118
           KD +YLE   PFC
Sbjct: 75  KDLVYLEPSPPFC 87


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 156 KDSLYLETVRPFC 118
           KD +YLE   PFC
Sbjct: 76  KDLVYLEPSPPFC 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,914
Number of Sequences: 438
Number of extensions: 3282
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)