Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a01
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024771-10|AAK70664.1|  433|Caenorhabditis elegans Hypothetical...    31   0.70 
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    31   0.92 
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF153275-1|AAD54940.1|  301|Caenorhabditis elegans transcription...    27   8.6  
AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical...    27   8.6  
AF003145-2|AAB57715.2|  301|Caenorhabditis elegans Runt related ...    27   8.6  
AB027412-1|BAA77765.1|  301|Caenorhabditis elegans RNT-1 protein.      27   8.6  

>AC024771-10|AAK70664.1|  433|Caenorhabditis elegans Hypothetical
           protein Y40B10A.9 protein.
          Length = 433

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -3

Query: 89  YCIFINFYPVLK--FVIIFYIICCSRRI 12
           Y IFI  + +L   FVIIFY IC +RR+
Sbjct: 381 YLIFIGIWVLLMVLFVIIFYCICVTRRV 408


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +1

Query: 103  DCGPFAVAPVLVTSSYPTRCEESPTCYP-CLPH-CPQSMVYCCDTRPKTPLRRSSCCDSK 276
            +CG   ++ V ++  Y   C  S T    C P  CP     CC  R K  + R+  C S 
Sbjct: 828  NCGVTTLSRVCLSQDYNCACSGSTTKQSECAPAPCPFPRTSCCGARKKVIVGRTFECSSA 887

Query: 277  E 279
            +
Sbjct: 888  D 888


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
 Frame = +1

Query: 85  QYCYPEDC-GPFAVAPVLVTSSYPTRCEES-----PTCYPCLPHCPQS-MVYCCDTRP 237
           Q C    C  P   APV    S    CE+S     P    C+P C Q     C  T+P
Sbjct: 111 QSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVPQCQQQCQQQCVQTQP 168


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +1

Query: 118 AVAPVLVTSSYPTRCEES---PTCYP-CLPHCPQSMVYCCDTRPKTPLRRSSCCDS 273
           AV     T++ P+ C ++   P C P CLP C Q +       P  P   S C  S
Sbjct: 214 AVTCSTCTNNCPSICSQANCIPQCMPRCLPTCIQQIQISVPLPPPAPRCDSMCMPS 269


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 106 CGPFAVAPVLVTSSYPTRCEESPTCYPCLPHCPQSMVYCCDTRPKTPLRRSSCC 267
           CGP   +PV      P     +P C P  P  P  +V CC    + P+  + CC
Sbjct: 100 CGP---SPVPAPCCPPPPAPAAPCCPPPPPPTPSPLV-CC---KQAPVPENPCC 146


>AF153275-1|AAD54940.1|  301|Caenorhabditis elegans transcription
           factor RUN protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 570 PHGSSVAVYLILHSISSVRGPRKPTVTSRNVSFNTAVFVS 451
           PH S  A    +HS  S++ P K  V   NVS NT+  +S
Sbjct: 197 PHPSISAALWKIHS-ESMKTPIKQKVEQENVSLNTSTCLS 235


>AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical
           protein C35E7.3 protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 427 TKYVIPCYRYEDGRIERYVPTRHGRLP 507
           T  +I   R   GR+E+ + TRHG LP
Sbjct: 349 TSKIIKLKRKPMGRVEKSIETRHGFLP 375


>AF003145-2|AAB57715.2|  301|Caenorhabditis elegans Runt related
           protein 1 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 570 PHGSSVAVYLILHSISSVRGPRKPTVTSRNVSFNTAVFVS 451
           PH S  A    +HS  S++ P K  V   NVS NT+  +S
Sbjct: 197 PHPSISAALWKIHS-ESMKTPIKQKVEQENVSLNTSTCLS 235


>AB027412-1|BAA77765.1|  301|Caenorhabditis elegans RNT-1 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 570 PHGSSVAVYLILHSISSVRGPRKPTVTSRNVSFNTAVFVS 451
           PH S  A    +HS  S++ P K  V   NVS NT+  +S
Sbjct: 197 PHPSISAALWKIHS-ESMKTPIKQKVEQENVSLNTSTCLS 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,737
Number of Sequences: 27780
Number of extensions: 292775
Number of successful extensions: 847
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)