Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11p23
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    30   0.25 
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    29   0.58 
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   9.5  

>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 29  NP*RSLLQSFKMVFHSRGFPSKLIYARNIF 118
           +P  S L S K +   +GFPSK IY+R++F
Sbjct: 278 DPNSSSLLSEKYITLDKGFPSKYIYSRSLF 307


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -2

Query: 414 APPPYQPRHAAAP 376
           APPP QP HAAAP
Sbjct: 20  APPPQQPAHAAAP 32


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 378 PVCSRGACRSHACRFDSCLCRYR 310
           P  + G C S+ CR  SC  +Y+
Sbjct: 396 PFLTNGGCYSYICRSRSCPSKYQ 418


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 180 NMYFIYNIVLCCEYIAKKSQKKIL 109
           NMY   + +LC E ++KK++  IL
Sbjct: 456 NMYLAEDRILCFELVSKKNEAWIL 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,222
Number of Sequences: 5004
Number of extensions: 43005
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)