Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11p23
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0132 - 12867353-12867377,12867925-12868430 32 0.46
01_03_0069 + 12192220-12192252,12192457-12192612,12193246-12193404 32 0.46
04_03_0874 + 20467608-20468306,20468575-20468736,20470083-204701... 31 0.80
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630... 30 1.8
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 29 3.2
06_03_0290 - 19193707-19193752,19193822-19194090 29 4.2
06_01_1112 - 9157776-9158149,9158248-9161158 29 4.2
04_04_0958 - 29690164-29690622 29 4.2
09_06_0332 + 22382508-22383214,22383576-22383631,22383673-223840... 28 5.6
03_01_0133 - 1057679-1057880,1058112-1058377 28 5.6
11_01_0084 - 640563-641000 28 7.4
04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276 28 7.4
01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646 28 7.4
04_04_1642 + 35007185-35007430 27 9.8
04_04_0347 + 24564589-24565296 27 9.8
04_04_0146 + 23106325-23108154 27 9.8
>01_03_0132 - 12867353-12867377,12867925-12868430
Length = 176
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 480 HRCLRTVRLSHRNNQSRME-PCAAPPPYQPRHAAAPVCSRGACR 352
H+C ++R SH +N + M P AA P R AAA + CR
Sbjct: 8 HKCRSSIRSSHSSNINAMVVPAAAAPECGRREAAAAAAAAVFCR 51
>01_03_0069 + 12192220-12192252,12192457-12192612,12193246-12193404
Length = 115
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -2
Query: 408 PPYQPRHAAAPVCSRG-ACRSHACRFDSCLC 319
P +P H P C RG CR C F C C
Sbjct: 8 PTPKPTHGCLPFCFRGRPCRKPRCVFSGCAC 38
>04_03_0874 +
20467608-20468306,20468575-20468736,20470083-20470160,
20470636-20470714,20470809-20470954,20471064-20471132,
20471262-20471430,20471526-20471776
Length = 550
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 488 RQASGSSPKEREVSQSSSWQRVGSARRP*GWP--ALREEA 601
+ +SG++ R S SS+ R+GS+RRP WP A+R A
Sbjct: 160 KPSSGNNGLRRMGSGSSNNARIGSSRRPVAWPPVAVRSSA 199
>09_06_0056 -
20561645-20561920,20562024-20562611,20562698-20563055,
20563149-20563483,20563593-20563633,20563722-20563932,
20564289-20564348,20564432-20564457,20565066-20565264
Length = 697
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 494 ASGSSPKEREVSQSSSWQR 550
ASGS PK+RE +Q + WQ+
Sbjct: 63 ASGSDPKDREGNQETDWQK 81
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 426 PSDSDCSGETASLSADSGDRIVKPQVAPP 512
P D +CSGE L A SG IV Q+ PP
Sbjct: 52 PDDDECSGEQHQLPAASG--IVTRQLLPP 78
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 476 R*QDRQASGSSPKEREVSQSSSWQRVGSA 562
R Q R+A+GS+ + R SQS+ W GSA
Sbjct: 61 RMQARRAAGSAARTRSPSQSNGWITGGSA 89
>06_01_1112 - 9157776-9158149,9158248-9161158
Length = 1094
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -3
Query: 452 LTGTIRVGWSPAQRRRPTSRATPPLPFVLVERVVRMLAALT 330
L G +R+G+SP Q P R L ++L+ ++ ++AA+T
Sbjct: 720 LCGVVRLGFSPCQTTSP-KRNRHILKYILLPGIIIVVAAVT 759
>04_04_0958 - 29690164-29690622
Length = 152
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -2
Query: 483 CHRCLRTVRLS---HRNNQSRMEPCAAPPPYQPRHAAAPVCSRGACRSHACRFDSCLCRY 313
C CLR L+ +N S + P P P PR + VC R + S A R L +
Sbjct: 15 CAPCLRDRLLALAAAQNEASSLPPPPEPVPVFPRSVSPYVCRRKSDASGARRRTPSLLFF 74
Query: 312 RRP 304
R P
Sbjct: 75 RTP 77
>09_06_0332 +
22382508-22383214,22383576-22383631,22383673-22384004,
22384395-22384445
Length = 381
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 411 PPPYQPRHAAAPVCS 367
PPPY P HA AP+ S
Sbjct: 319 PPPYSPGHAGAPIRS 333
>03_01_0133 - 1057679-1057880,1058112-1058377
Length = 155
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 465 TVRLSHRNNQSRMEPCAAPPPYQPRHA--AAPVCSRGA-CRSHA 343
T R + ++EP + P P +PR A+P C+R A RS A
Sbjct: 6 TERQMRWEGEQKLEPLSPPAPARPRACTHASPACTRSARMRSEA 49
>11_01_0084 - 640563-641000
Length = 145
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Frame = -2
Query: 549 RCHDDDCETSRSLGELPEA*RSC---------HR-CLRTVRLSHRN----NQSRMEPCAA 412
R D+ E S LGEL E R C H+ C+ +H + P ++
Sbjct: 64 RQRDESSECSICLGELEEGERCCTLVACRHEFHKECIYRWLANHNTCPLCRHMPLPPASS 123
Query: 411 PPPYQPRHAAAP 376
PPP P H A+P
Sbjct: 124 PPPAPPPHHASP 135
>04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276
Length = 924
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 441 NQSRMEPCAAPPPYQPRHAAAPVCSRGACRSHACRFD 331
++S+ A PP ++P HA + C+ G+ S AC D
Sbjct: 874 SESQPTAWAGPPGFEP-HAISKKCTAGSNASQACSKD 909
>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
Length = 378
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 486 SCHRCLRTVRLSHRNNQSRMEPCAAPPPYQP 394
+CHR R+ R++ R+++ C P P P
Sbjct: 202 TCHRRSRSSRIAIRHSRDHSSDCLTPAPMPP 232
>04_04_1642 + 35007185-35007430
Length = 81
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -2
Query: 546 CHDDDCETSRSLGELPEA*RSCHRCLRTVRLSHRNNQSRMEPCAAPPPYQPRHAAA 379
C D E ++ + P C +CL V LS Q + C +P H AA
Sbjct: 12 CVSSDAEEEAAVAK-PMVVAGCPQCLMYVMLSEEEQQPKCPRCKSPVLLHFLHGAA 66
>04_04_0347 + 24564589-24565296
Length = 235
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 450 HRNNQSRMEPCAAPPPYQPRHAAAPVCSRGACRSHA 343
H + + P AP + RHA APV S +HA
Sbjct: 103 HHRHATATAPAHAPSSHHDRHAPAPVHSSWPWPAHA 138
>04_04_0146 + 23106325-23108154
Length = 609
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 468 RTVRLSHRNNQSRMEPCAAPPPY-QPRHAAAP 376
R +RL HR + P APPP +P +AA P
Sbjct: 3 RALRLRHRPRRPPPVPAQAPPPSPRPWYAAPP 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,933,968
Number of Sequences: 37544
Number of extensions: 303353
Number of successful extensions: 1084
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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