Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11p23
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    27   8.7  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    27   8.7  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    27   8.7  

>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
           protein F27D4.6 protein.
          Length = 1008

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 367 SWSVSFACLPL*LMSLPLQASTSNHLMSRKH 275
           +W  SF   P  ++S+ L  +T  H+ S KH
Sbjct: 731 TWKCSFCSTPTRIVSMSLLGNTFLHIASEKH 761


>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
           family protein 4 protein.
          Length = 1802

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 154 HYIINKIHIKF*VRVCSNKIFDSELKSIKTVMFVFRVLF 270
           H+IIN   + F V V +  +    LKS  T+MFVF +++
Sbjct: 367 HFIINYAKLTFAVIVLTILMHFVALKSDMTLMFVFLMIY 405


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 437 RVGWSPAQRRRPTSRATPPLPFVLVERVVRMLAALTHVF 321
           R+GWSP+  R P       L F++   V+ ++  +  VF
Sbjct: 732 RIGWSPSNYRNPRDCFLNLLCFIIAPLVIILILVVIIVF 770


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 437  RVGWSPAQRRRPTSRATPPLPFVLVERVVRMLAALTHVF 321
            R+GWSP+  R P       L F++   V+ ++  +  VF
Sbjct: 954  RIGWSPSNYRNPRDCFLNLLCFIIAPLVIILILVVIIVF 992


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,467,063
Number of Sequences: 27780
Number of extensions: 258144
Number of successful extensions: 776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)