Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11p17
(635 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT010275-1|AAQ23593.1| 421|Drosophila melanogaster RE08107p pro... 31 1.3
AE014296-1041|ABC66161.1| 421|Drosophila melanogaster CG33993-P... 31 1.3
AY071211-1|AAL48833.1| 398|Drosophila melanogaster RE25723p pro... 30 2.3
AE014298-2604|AAF48758.1| 398|Drosophila melanogaster CG8173-PA... 30 2.3
BT025042-1|ABE73213.1| 2313|Drosophila melanogaster LD27386p pro... 29 4.0
AE014298-1909|AAF48273.2| 2362|Drosophila melanogaster CG1716-PA... 29 4.0
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 29 5.3
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 29 5.3
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 29 5.3
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 29 5.3
AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC... 29 7.0
AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB... 29 7.0
AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA... 29 7.0
AE014298-1581|AAF48017.1| 424|Drosophila melanogaster CG11105-P... 29 7.0
AE014298-1580|AAN09292.1| 488|Drosophila melanogaster CG11105-P... 29 7.0
AY069723-1|AAL39868.1| 492|Drosophila melanogaster LP02895p pro... 28 9.2
AE014296-1|AAF47322.2| 492|Drosophila melanogaster CG32475-PA p... 28 9.2
>BT010275-1|AAQ23593.1| 421|Drosophila melanogaster RE08107p
protein.
Length = 421
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 540 HDKHEIRGQKHYNEDKTEQNASSHQTVIVDEETERAKESKEQDNCAAVDDSPPLV 376
HD E+ GQ+H + + + H + +E E +NC + D PPLV
Sbjct: 108 HDVQELSGQEHPHP---QPGSHPHPHHLRSPSSEEDNSPTEMNNCRRLVDKPPLV 159
>AE014296-1041|ABC66161.1| 421|Drosophila melanogaster CG33993-PA
protein.
Length = 421
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 540 HDKHEIRGQKHYNEDKTEQNASSHQTVIVDEETERAKESKEQDNCAAVDDSPPLV 376
HD E+ GQ+H + + + H + +E E +NC + D PPLV
Sbjct: 108 HDVQELSGQEHPHP---QPGSHPHPHHLRSPSSEEDNSPTEMNNCRRLVDKPPLV 159
>AY071211-1|AAL48833.1| 398|Drosophila melanogaster RE25723p
protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 189 DFRAKREP--NVRVLGHGECALELQH--IIGDDGPNGSGHGVHFVVLRQCFTSIGSLL 350
+ R K++ N R++ + +L+H I+G G + G++ + L C TS+GS+L
Sbjct: 66 NMRVKKDTLFNERIVHEADILRKLKHPNIVGFRGVITNDEGINTLALEMCTTSLGSIL 123
>AE014298-2604|AAF48758.1| 398|Drosophila melanogaster CG8173-PA
protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 189 DFRAKREP--NVRVLGHGECALELQH--IIGDDGPNGSGHGVHFVVLRQCFTSIGSLL 350
+ R K++ N R++ + +L+H I+G G + G++ + L C TS+GS+L
Sbjct: 66 NMRVKKDTLFNERIVHEADILRKLKHPNIVGFRGVITNDEGINTLALEMCTTSLGSIL 123
>BT025042-1|ABE73213.1| 2313|Drosophila melanogaster LD27386p
protein.
Length = 2313
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 498 DKTEQNASSHQTVIVDEETERAKESKEQDNCAAVDDSP-PLVDLD 367
D E + S Q + ++ ETE K +EQ+ V+ P L+D+D
Sbjct: 311 DAEENSDSDSQIIFIEIETESPKGEEEQEEGRPVEVEPQDLIDID 355
>AE014298-1909|AAF48273.2| 2362|Drosophila melanogaster CG1716-PA
protein.
Length = 2362
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 498 DKTEQNASSHQTVIVDEETERAKESKEQDNCAAVDDSP-PLVDLD 367
D E + S Q + ++ ETE K +EQ+ V+ P L+D+D
Sbjct: 311 DAEENSDSDSQIIFIEIETESPKGEEEQEEGRPVEVEPQDLIDID 355
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -2
Query: 355 SYSKLPIEVKH*RSTTKWTPCPEPFGPSSPMMC*SSRAHSPCPRTRTFGSRLARKSNRR* 176
SY P ++ + +++P + P+SP+ SS HSP + GS + S R
Sbjct: 1769 SYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYS 1828
Query: 175 KKMRLSS 155
M + S
Sbjct: 1829 PNMSIYS 1835
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -2
Query: 355 SYSKLPIEVKH*RSTTKWTPCPEPFGPSSPMMC*SSRAHSPCPRTRTFGSRLARKSNRR* 176
SY P ++ + +++P + P+SP+ SS HSP + GS + S R
Sbjct: 288 SYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYS 347
Query: 175 KKMRLSS 155
M + S
Sbjct: 348 PNMSIYS 354
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -2
Query: 355 SYSKLPIEVKH*RSTTKWTPCPEPFGPSSPMMC*SSRAHSPCPRTRTFGSRLARKSNRR* 176
SY P ++ + +++P + P+SP+ SS HSP + GS + S R
Sbjct: 1309 SYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYS 1368
Query: 175 KKMRLSS 155
M + S
Sbjct: 1369 PNMSIYS 1375
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -2
Query: 355 SYSKLPIEVKH*RSTTKWTPCPEPFGPSSPMMC*SSRAHSPCPRTRTFGSRLARKSNRR* 176
SY P ++ + +++P + P+SP+ SS HSP + GS + S R
Sbjct: 1767 SYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYS 1826
Query: 175 KKMRLSS 155
M + S
Sbjct: 1827 PNMSIYS 1833
>AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC,
isoform C protein.
Length = 3604
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/60 (23%), Positives = 24/60 (40%)
Frame = -3
Query: 564 LERHPQTIHDKHEIRGQKHYNEDKTEQNASSHQTVIVDEETERAKESKEQDNCAAVDDSP 385
L HPQ H + + + Q+H + Q +S Q ++ + D C V +P
Sbjct: 560 LPPHPQQQHQQQQQQQQQHQAHQQQHQRSSPAQVQQQQQQQMNSSRQSHNDMCRQVVTTP 619
>AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB,
isoform B protein.
Length = 3604
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/60 (23%), Positives = 24/60 (40%)
Frame = -3
Query: 564 LERHPQTIHDKHEIRGQKHYNEDKTEQNASSHQTVIVDEETERAKESKEQDNCAAVDDSP 385
L HPQ H + + + Q+H + Q +S Q ++ + D C V +P
Sbjct: 560 LPPHPQQQHQQQQQQQQQHQAHQQQHQRSSPAQVQQQQQQQMNSSRQSHNDMCRQVVTTP 619
>AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA,
isoform A protein.
Length = 3604
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/60 (23%), Positives = 24/60 (40%)
Frame = -3
Query: 564 LERHPQTIHDKHEIRGQKHYNEDKTEQNASSHQTVIVDEETERAKESKEQDNCAAVDDSP 385
L HPQ H + + + Q+H + Q +S Q ++ + D C V +P
Sbjct: 560 LPPHPQQQHQQQQQQQQQHQAHQQQHQRSSPAQVQQQQQQQMNSSRQSHNDMCRQVVTTP 619
>AE014298-1581|AAF48017.1| 424|Drosophila melanogaster CG11105-PA,
isoform A protein.
Length = 424
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 558 RHPQTIHDKHEIRGQKHYNEDKTEQNASSHQTVIVDEETERAKESKEQDNCAAVDD 391
RH + +H ++ QKH ++ E+ S+H+T ++ ++ S NC + D
Sbjct: 116 RHQLSAQQQH-LQHQKHQQQEP-EKRKSNHKTKNKQQQKQQQPHSTRHQNCCHIID 169
>AE014298-1580|AAN09292.1| 488|Drosophila melanogaster CG11105-PB,
isoform B protein.
Length = 488
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 558 RHPQTIHDKHEIRGQKHYNEDKTEQNASSHQTVIVDEETERAKESKEQDNCAAVDD 391
RH + +H ++ QKH ++ E+ S+H+T ++ ++ S NC + D
Sbjct: 180 RHQLSAQQQH-LQHQKHQQQEP-EKRKSNHKTKNKQQQKQQQPHSTRHQNCCHIID 233
>AY069723-1|AAL39868.1| 492|Drosophila melanogaster LP02895p
protein.
Length = 492
Score = 28.3 bits (60), Expect = 9.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 290 WAWRPFCCAPSVFYF 334
W W+P CAP YF
Sbjct: 195 WEWQPLACAPEKLYF 209
>AE014296-1|AAF47322.2| 492|Drosophila melanogaster CG32475-PA
protein.
Length = 492
Score = 28.3 bits (60), Expect = 9.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 290 WAWRPFCCAPSVFYF 334
W W+P CAP YF
Sbjct: 195 WEWQPLACAPEKLYF 209
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,257,979
Number of Sequences: 53049
Number of extensions: 549256
Number of successful extensions: 1986
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1982
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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