Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11p12
         (172 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   0.44 
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   1.8  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    23   4.1  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   5.4  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    23   7.1  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    22   9.4  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    22   9.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    22   9.4  

>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 170 FFLIHITFILFQISLVTELMSKWT*AQ*IRYHNRLGLHLLYYCSTTTVL 24
           FF++H+T     +S + E  SK    Q   +   LG   L YC +  +L
Sbjct: 232 FFVVHLTDAFHFLSKLDERFSKLNAKQQDLFFGNLGASNLRYCLSQYIL 280


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 168 FFNTYYIYFVSDIVGYRTDVEMDIG 94
           FF TYYI  + DI+   TD +   G
Sbjct: 916 FFQTYYISLLQDILYVLTDSDHKSG 940


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 67  SLLWYLIYWAYVHF 108
           S+L Y+IYW +V F
Sbjct: 293 SILSYIIYWLFVAF 306


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +1

Query: 79  YLIYWAYVHFDISSVT 126
           + ++W Y+HF+I +++
Sbjct: 297 FFLFWFYMHFNILTIS 312


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 93  GLCPFRHQFCNQRY 134
           GL P + QFC +RY
Sbjct: 361 GLTPAQVQFCQERY 374


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 152 TFILFQISLVTELMSKW 102
           T +LFQ  L  E++ KW
Sbjct: 224 TILLFQQELQAEIIEKW 240


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 23  ARLL*CCSNKANANLAYYGI*FIGPMSISTSV 118
           ARLL   + +  A L YYG   I P ++S  V
Sbjct: 264 ARLLPLITPEEAAELTYYGSEVIHPFTMSQVV 295


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = +3

Query: 72   IMVSNLLGLCPFRHQFCNQR---YLK 140
            +MV+ +  LC F H F +Q    YLK
Sbjct: 963  LMVNPIQSLCKFVHSFLDQHESMYLK 988


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,063
Number of Sequences: 5004
Number of extensions: 8729
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)