Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11p12
         (172 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0213 - 2692253-2694562                                           27   2.1  
04_03_0580 + 17487305-17487469,17487866-17488024                       26   3.8  
03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093     26   3.8  
02_01_0009 + 58815-58884,59086-59156,59632-59725,59797-59864,601...    25   6.6  

>04_01_0213 - 2692253-2694562
          Length = 769

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 155 ITFILFQISLVTELMSKWT*AQ*IRYHNRLGLHLLYYCST 36
           IT+ L     V EL+S        RYHN LG H+L Y S+
Sbjct: 404 ITWKLKMWKSVLELVSLDDRWMEYRYHNSLGFHMLCYQSS 443


>04_03_0580 + 17487305-17487469,17487866-17488024
          Length = 107

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 87  LLGLCPFRHQFCNQRYLKQNKCNM 158
           L+GLCP RH F   +    N C +
Sbjct: 53  LIGLCPIRHNFFRVKNGIMNDCTV 76


>03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093
          Length = 435

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 168 FFNTYYIYFVSDIVGYRTDV 109
           F   +++YF+ D+ GYR+DV
Sbjct: 3   FQAAFFLYFLLDLGGYRSDV 22


>02_01_0009 +
           58815-58884,59086-59156,59632-59725,59797-59864,
           60145-60243,60538-60594,60943-61011,63111-63179,
           63372-64322
          Length = 515

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 27  DCCSAAVIKQMQT*PIMVSNLLGLCPFRHQFCNQRYLKQNKCN 155
           DC + A+  QM   P  VSN   +    H   ++R L  +K N
Sbjct: 266 DCGNGAISDQMDNAPAYVSNEFSMQKDAHDRGSRRELSWSKSN 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,015,416
Number of Sequences: 37544
Number of extensions: 52308
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)