Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11p10
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       64   2e-12
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 63.7 bits (148), Expect = 2e-12
 Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
 Frame = +1

Query: 223 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 402
           V G  V      F    L+  +L  I   G++ P+ VQ   +P  + G D++  A++G G
Sbjct: 186 VSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSG 245

Query: 403 KTAVFVLATLQQL-EPSESHVYVLVMCH--------TRELAFQISKEYERFSKYMSGVRV 555
           KTA F +  +  L E S   V     C         TREL  QI ++  +FS   S ++ 
Sbjct: 246 KTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFS-LNSILKT 304

Query: 556 SVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDE 711
            V +GG  +      L   C HI+V TPGR+L                +LDE
Sbjct: 305 VVAYGGTSVMHQRGKLSAGC-HILVATPGRLLDFVEKGRVKFSSVQFLVLDE 355


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 203 KWRQRRRLKDPTYPSTVL 256
           KWR  R+L  PT+   VL
Sbjct: 133 KWRNHRKLIAPTFHLNVL 150


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 439 AAAMLPKQTRLSYPYRTWLGKVCPYRG 359
           A  + P++T   + YR W  ++  Y G
Sbjct: 169 AITIFPQRTDGKHDYRVWNHQLISYAG 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,763
Number of Sequences: 438
Number of extensions: 3866
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)