Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11p03
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0198 - 1556215-1556298,1556412-1556580,1556666-1556921,155...    32   0.20 
12_01_0603 + 4937472-4938351,4938597-4938689,4938820-4939589,493...    28   2.5  
05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399...    28   2.5  
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894...    28   3.3  
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045           27   5.7  
09_03_0101 + 12374771-12374926,12375505-12375731,12375816-123759...    27   5.7  
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    27   7.6  

>11_01_0198 -
           1556215-1556298,1556412-1556580,1556666-1556921,
           1557000-1557114,1557191-1557441,1557565-1557892,
           1558197-1558358,1558846-1558985,1559325-1559436,
           1560028-1560200,1560411-1560506,1560687-1560930
          Length = 709

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = -3

Query: 113 RRKFPESGISFLPSNLSLNFKLKTQLKAVFSAI 15
           RR+   SG+S LPSN+S  FKL T++K + S++
Sbjct: 528 RRQAIISGLSNLPSNVSEVFKLDTEMKELASSL 560


>12_01_0603 +
           4937472-4938351,4938597-4938689,4938820-4939589,
           4939706-4939809,4940026-4940548,4940697-4941074
          Length = 915

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = +1

Query: 49  SLKLSDKLEGRKEMPLSGNFRREMF 123
           +L L DKL+ +K++PL+GN R+++F
Sbjct: 621 NLNLLDKLK-KKKLPLTGNARQQLF 644


>05_03_0413 +
           13639476-13639537,13639702-13639783,13639865-13639940,
           13640016-13640101,13640294-13640370,13641138-13641194,
           13641294-13641378,13642331-13642417,13642603-13642683,
           13643748-13643885,13643962-13644147,13644242-13644268
          Length = 347

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 52  LKLSDKLEGRKEMPLSGNFRREMFVAMKNAKKTKENSEA 168
           +KLS  LEG  + P      ++   A KNAK T  + EA
Sbjct: 279 MKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKEA 317


>07_01_1032 -
           8947594-8947769,8947885-8948601,8948973-8949049,
           8949264-8949655,8949746-8950002,8950234-8950921
          Length = 768

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 408 FFFINTKLY*KTKYITHKYINPIYYSFFNKLLRI 307
           F FI+TKL  K   +THK +N + Y  +N  LRI
Sbjct: 509 FAFIHTKLRNK---LTHKKLNKLVYVNYNLQLRI 539


>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
          Length = 1294

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 110  VAKCLWL*RMPKKRKKTA-KQIWLTMVKTIQQITMMKQTKQLPCLQNQLNRTNLPTL 277
            +A+CL+  ++P   +  + K +WL  + ++QQI    +     C+   L   NL T+
Sbjct: 838  LARCLYWEKLPSLGELVSLKHLWLECLPSLQQIGQSSEASSSNCVDLSL-PPNLDTM 893


>09_03_0101 +
           12374771-12374926,12375505-12375731,12375816-12375971,
           12376066-12376251,12376407-12376591,12376984-12376991
          Length = 305

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 360 HKYINPIYYSFFNKLL 313
           HK+  PIYY  FN LL
Sbjct: 254 HKFYGPIYYYVFNSLL 269


>02_01_0399 -
           2905026-2905406,2905522-2905630,2905809-2907475,
           2907650-2907790,2907870-2908043,2908577-2908851,
           2909592-2909755,2910409-2910536,2910628-2910734,
           2911747-2911880,2912266-2912441,2912530-2914257,
           2915084-2915239,2915328-2915486,2915581-2915751,
           2915931-2916047,2916417-2916473,2916565-2916680,
           2916790-2916916,2917862-2917945
          Length = 2056

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 402 FINTKLY*KTKYITHKYINPIYYSFFNK 319
           F+  +LY + K+ + + +   YY+F NK
Sbjct: 744 FVGLQLYREGKFYSRRLVEDCYYTFVNK 771


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,035,641
Number of Sequences: 37544
Number of extensions: 119953
Number of successful extensions: 257
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)