Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11p02
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   142   2e-34
Z49127-1|CAA88944.1|  333|Caenorhabditis elegans Hypothetical pr...    43   2e-04
U15420-1|AAA67063.1|  333|Caenorhabditis elegans lactate dehydro...    43   2e-04
L43563-1|AAC41613.1|  333|Caenorhabditis elegans L-lactate dehyd...    43   2e-04
AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical ...    31   0.89 
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z72512-3|CAA96665.2|  310|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical ...    28   8.3  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  142 bits (344), Expect = 2e-34
 Identities = 71/186 (38%), Positives = 117/186 (62%)
 Frame = +2

Query: 200 QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFIGDT 379
           +V+++GAA  IG  + L LK++  V+ L LYD  +   G   +LS++     V+A  G  
Sbjct: 30  KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNT-PGVAADLSHIDSNAKVTAHTGPK 88

Query: 380 NLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNPI 559
            L  A+ +++++V+ + +PRKPG TR+ +   NA +++ L   IA  + +A +AI TNP+
Sbjct: 89  ELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPV 148

Query: 560 NYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGGHSDKT 739
           N  +P AS V+ K G Y+P ++FG+T +D  RS++FV++    +A +  VPV+GGH+  T
Sbjct: 149 NSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPVVGGHAGIT 208

Query: 740 IIPLFS 757
           IIPL S
Sbjct: 209 IIPLLS 214


>Z49127-1|CAA88944.1|  333|Caenorhabditis elegans Hypothetical
           protein F13D12.2 protein.
          Length = 333

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 37/183 (20%), Positives = 84/183 (45%), Gaps = 2/183 (1%)
 Frame = +2

Query: 200 QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDD-DDRIKGTELELSNLPGGPSVSAFIGD 376
           +V+V+G    +G   +  + + +  ++L L D   D++KG  ++L +            D
Sbjct: 22  KVTVVGVGQ-VGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKAD 80

Query: 377 TNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNP 556
           T+       S L V+ +   ++ G TR  ++  N  + + +   +   + +  + + +NP
Sbjct: 81  TDYSITA-GSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNP 139

Query: 557 INYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIGGHSD 733
           ++ L    + V +K       ++FG  T++D++R R  +++ L I        +IG H D
Sbjct: 140 VDVL----TYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGD 195

Query: 734 KTI 742
            ++
Sbjct: 196 SSV 198


>U15420-1|AAA67063.1|  333|Caenorhabditis elegans lactate
           dehydrogenase protein.
          Length = 333

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 37/183 (20%), Positives = 84/183 (45%), Gaps = 2/183 (1%)
 Frame = +2

Query: 200 QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDD-DDRIKGTELELSNLPGGPSVSAFIGD 376
           +V+V+G    +G   +  + + +  ++L L D   D++KG  ++L +            D
Sbjct: 22  KVTVVGVGQ-VGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKAD 80

Query: 377 TNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNP 556
           T+       S L V+ +   ++ G TR  ++  N  + + +   +   + +  + + +NP
Sbjct: 81  TDYSITA-GSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNP 139

Query: 557 INYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIGGHSD 733
           ++ L    + V +K       ++FG  T++D++R R  +++ L I        +IG H D
Sbjct: 140 VDVL----TYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGD 195

Query: 734 KTI 742
            ++
Sbjct: 196 SSV 198


>L43563-1|AAC41613.1|  333|Caenorhabditis elegans L-lactate
           dehydrogenase protein.
          Length = 333

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 37/183 (20%), Positives = 84/183 (45%), Gaps = 2/183 (1%)
 Frame = +2

Query: 200 QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDD-DDRIKGTELELSNLPGGPSVSAFIGD 376
           +V+V+G    +G   +  + + +  ++L L D   D++KG  ++L +            D
Sbjct: 22  KVTVVGVGQ-VGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKAD 80

Query: 377 TNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNP 556
           T+       S L V+ +   ++ G TR  ++  N  + + +   +   + +  + + +NP
Sbjct: 81  TDYSITA-GSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNP 139

Query: 557 INYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIGGHSD 733
           ++ L    + V +K       ++FG  T++D++R R  +++ L I        +IG H D
Sbjct: 140 VDVL----TYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGD 195

Query: 734 KTI 742
            ++
Sbjct: 196 SSV 198


>AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical
           protein Y73B3A.3 protein.
          Length = 655

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
 Frame = -1

Query: 724 TSYYRYLYLLC--VNFQRFSNK*STS*RVYMRDSKHFGRIVTPVFIHYSTCKRYQIIYGV 551
           T++Y  LYLLC  V F  FS       +V +   +H   +   V++ YS    Y I +  
Sbjct: 468 TAFYDILYLLCFLVFFTDFSRLSRYENQVLLASKQHMCHVWEKVWVFYSRNPSYYIDH-F 526

Query: 550 GRYSYKRFLILS---CNGFAKSLNQWCISPE 467
            RY    F I S   C    K    + I+ E
Sbjct: 527 YRYLPTEFTIFSLGKCFSICKKQQNYLINTE 557


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +2

Query: 578  ASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINA 694
            A  V Y +GCY PS    +T IDT+ S S VA  + INA
Sbjct: 2031 AGRVNYIFGCYGPS----VT-IDTACSSSLVALEMAINA 2064


>Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical protein
            C26H9A.2 protein.
          Length = 1334

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/101 (24%), Positives = 53/101 (52%)
 Frame = +2

Query: 50   RNKKVTKIVKCDVKKHILQKY*KKMAQKIFCCLFATQLKKNTLILQKRNVQVSVIGAASD 229
            RN+++  + + D+ KH+L     ++A+K+F       L +N ++LQ     +  +   S 
Sbjct: 876  RNQQI--MCQVDMPKHLL-----RIAEKLF-------LTENHILLQPFYYLLERLSYQSL 921

Query: 230  IGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGP 352
              + +  FL+ +S +    L DD+D    +++E+++  GGP
Sbjct: 922  TPNQLRSFLRLDSPLCCRSLDDDEDDDDDSKIEIADNEGGP 962


>Z72512-3|CAA96665.2|  310|Caenorhabditis elegans Hypothetical
           protein R07B5.5 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 134 IFCCLFATQLKKNTLILQKRNVQVSVIGAA 223
           ++CC F  + +KN +++QK  +   ++GAA
Sbjct: 189 VYCCAFKNKTEKN-IMIQKAILNTVIVGAA 217


>AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical
           protein T12B3.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 194 NVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRI 310
           NV V V+G+A+ + SY  L   +   +  +H+ DDD+ +
Sbjct: 428 NVTVIVLGSANLLISYFFLPESKGVNLDDVHVNDDDENV 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,327,033
Number of Sequences: 27780
Number of extensions: 375413
Number of successful extensions: 1040
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)