Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11o19
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...   217   2e-57
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   4.8  
SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.8  
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    26   4.8  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   8.4  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   8.4  

>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score =  217 bits (529), Expect = 2e-57
 Identities = 101/169 (59%), Positives = 120/169 (71%), Gaps = 3/169 (1%)
 Frame = +3

Query: 201 EKLKEGPNLTDFISEDRPKNWDE---YQGKLKREKGESERLRLPPWLKTTIPTGSKFNEI 371
           EKL +GP+  DF++ D+P   DE      K++   G   + RLP WLKT +P G+ FN I
Sbjct: 29  EKLAKGPSFADFLNMDKPLTADEAFELDRKVELPNGSIHK-RLPSWLKTKVPLGTNFNRI 87

Query: 372 KQQLRSLKLSTVCEEARCPNIGECWSGGKHGASTATIMLMGDTCTRGCMFCSVKTSRNPP 551
           K  LR   L TVCEEA+CPNIGECW G     +TATIMLMGDTCTRGC FCSVKTSR P 
Sbjct: 88  KHDLRGSHLHTVCEEAKCPNIGECWGGKDKSRATATIMLMGDTCTRGCRFCSVKTSRRPG 147

Query: 552 PLDPEEPRNTAHAINQWGVGYIVLTSVDRDDLPDGGSLHFAETVKEIKK 698
           PLDP EP NTA AI QW +GYIVLTSVDRDDL D G+ H A+T+++IK+
Sbjct: 148 PLDPNEPENTAEAIKQWNLGYIVLTSVDRDDLTDLGANHIAKTIQKIKE 196


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 691 ISLTVSAKCSEPPSGKS 641
           + + VSAK SEPPS KS
Sbjct: 60  LKMEVSAKISEPPSSKS 76


>SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 570 PRNTAHAINQWGVGYIVLTSVDRDDLPDGGSLHFA 674
           PR+  H  N+  + Y+  T+ D   LP+GG+   A
Sbjct: 15  PRSVCHVRNRENI-YLYWTTFDAHKLPNGGNADMA 48


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 246 DRPKNWDEYQGKLKREKGESERLRLPP 326
           D  K  D Y  K + + G +ER RLPP
Sbjct: 412 DAIKAVDSYSQKWQEQTGWTERFRLPP 438


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = -2

Query: 490 INMMVAVDAPCFPPLQHSPILGHLASSQTVLSFKLRNCCFISLNFEPVGIVVFNHG 323
           I+++     P F P QH   +   +    +   KL N     +N  P+   V   G
Sbjct: 237 IHIIALKSPPLFSPYQHLLYVAEASGLLEIYDLKLENKLVSGMNLSPIFKQVLREG 292


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 405  VCEEARCPNIGECWSGGKHGA 467
            +C+E     IGE W  GKHG+
Sbjct: 1204 ICQEGE---IGEIWINGKHGS 1221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,934
Number of Sequences: 5004
Number of extensions: 63480
Number of successful extensions: 224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)