Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11o19
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0096 - 22777684-22777797,22778668-22779047,22779162-227793... 205 2e-53
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 180 1e-45
01_06_0849 + 32433429-32433743,32433840-32434021,32434235-324343... 176 1e-44
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127... 30 2.2
11_01_0143 + 1177220-1177462,1177727-1177855,1178114-1178170,117... 29 3.8
06_01_0360 + 2581774-2582288,2582414-2582609 29 3.8
03_06_0441 - 33961268-33961633 29 3.8
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 28 6.6
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 28 8.8
01_01_1195 - 9567023-9567789,9567871-9568120 28 8.8
>04_04_0096 -
22777684-22777797,22778668-22779047,22779162-22779373,
22780119-22780561
Length = 382
Score = 205 bits (501), Expect = 2e-53
Identities = 89/127 (70%), Positives = 105/127 (82%)
Frame = +3
Query: 321 PPWLKTTIPTGSKFNEIKQQLRSLKLSTVCEEARCPNIGECWSGGKHGASTATIMLMGDT 500
P W+K TIP G+K+ IK +LR LKL TVCEEARCPN+GECWSGG+ G +TATIM++GDT
Sbjct: 83 PKWMKETIPGGAKYAGIKAKLRELKLHTVCEEARCPNLGECWSGGETGTATATIMILGDT 142
Query: 501 CTRGCMFCSVKTSRNPPPLDPEEPRNTAHAINQWGVGYIVLTSVDRDDLPDGGSLHFAET 680
CTRGC FC+VKTSR PPP DP+EP N A AI WG+ YIV+TSVDRDDLPD GS HFAET
Sbjct: 143 CTRGCRFCNVKTSRTPPPPDPDEPSNVAQAIASWGLEYIVITSVDRDDLPDQGSGHFAET 202
Query: 681 VKEIKKL 701
V+++K L
Sbjct: 203 VQKLKVL 209
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 180 bits (437), Expect = 1e-45
Identities = 83/141 (58%), Positives = 98/141 (69%), Gaps = 6/141 (4%)
Frame = +3
Query: 297 GESERLRLPPWLKTTIPTGSKFNEIKQQLRSLKLSTVCEEARCPNIGECWSGGK------ 458
G R P WL+ G K+ +++ L LKL+TVC EA+CPNIGECW GG
Sbjct: 71 GRDPAARKPAWLRQRAAQGEKYARLRESLGELKLNTVCVEAQCPNIGECWDGGGGAGGDG 130
Query: 459 HGASTATIMLMGDTCTRGCMFCSVKTSRNPPPLDPEEPRNTAHAINQWGVGYIVLTSVDR 638
G +TATIML+GDTCTRGC FC+VKTS PPP D EP TA A+ WGV Y+VLTSVDR
Sbjct: 131 DGIATATIMLLGDTCTRGCRFCAVKTSNKPPPPDALEPLRTAVAVASWGVDYVVLTSVDR 190
Query: 639 DDLPDGGSLHFAETVKEIKKL 701
DDLPDGGS HFA+TVK +K+L
Sbjct: 191 DDLPDGGSGHFAQTVKALKEL 211
>01_06_0849 +
32433429-32433743,32433840-32434021,32434235-32434310,
32434413-32434570,32435567-32435738,32435817-32435927,
32436197-32436280
Length = 365
Score = 176 bits (429), Expect = 1e-44
Identities = 78/134 (58%), Positives = 96/134 (71%), Gaps = 6/134 (4%)
Frame = +3
Query: 297 GESERLRLPPWLKTTIPTGSKFNEIKQQLRSLKLSTVCEEARCPNIGECWSGGK------ 458
G ++ P WL+ G K+ +++ + LKL+TVC EA+CPNIGECW+GG
Sbjct: 58 GRDPEVKKPAWLRQRAAQGEKYARLRESIGELKLNTVCVEAQCPNIGECWNGGGGAGGEG 117
Query: 459 HGASTATIMLMGDTCTRGCMFCSVKTSRNPPPLDPEEPRNTAHAINQWGVGYIVLTSVDR 638
G +TATIM++GDTCTRGC FC+VKTS PPP DP EP NTA A+ WGV Y+VLTSVDR
Sbjct: 118 DGIATATIMVLGDTCTRGCRFCAVKTSNKPPPPDPLEPLNTALAVASWGVDYVVLTSVDR 177
Query: 639 DDLPDGGSLHFAET 680
DDLPDGGS HFA+T
Sbjct: 178 DDLPDGGSSHFAQT 191
>12_01_1041 -
10711362-10711428,10711571-10712262,10712622-10712777,
10712885-10713957,10714422-10714524,10714694-10714876,
10715007-10715099,10715379-10715564,10716530-10716793
Length = 938
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 270 YQGKLKREKGESERLRLP--PWLKTTIPTG 353
Y+ ++ EKG ER RLP PW T PTG
Sbjct: 691 YKERILSEKGRRERERLPDRPWKIKTNPTG 720
>11_01_0143 +
1177220-1177462,1177727-1177855,1178114-1178170,
1178369-1178601,1178880-1178971,1179116-1179330,
1180153-1180161
Length = 325
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 336 TTIPTGSKFNEIKQQ-LRSLKLSTVCEEARCPNIGECWSGG 455
TT P G+ +++ +++ ++ LK++ CE C + W+GG
Sbjct: 264 TTAPQGADYHKCREEVVKLLKVNAPCETKNC-SFNGVWNGG 303
>06_01_0360 + 2581774-2582288,2582414-2582609
Length = 236
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 537 SRNPPPLDPEEPRNTAHAINQWGVGYIVLTSVDRDDLP 650
S PPP E R++A A + GVG +++ S D +P
Sbjct: 38 SEQPPPTQQMERRSSAAAAAEEGVGVVLVGSGDPGRIP 75
>03_06_0441 - 33961268-33961633
Length = 121
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 276 GKLKREKGESERLRLPPWLKTTIPTGSKFNEI 371
G+ +RE E ERLRL W + P G + + +
Sbjct: 70 GERRREAEEGERLRLERWWRVATPLGFESDNV 101
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Frame = +3
Query: 147 KHLDFPRYKHSNKLDAIREKLKEGPNLTDFISEDRPKN------WDEYQGKLKREKGESE 308
+HL K NK +A E++ E + E+ PKN D QGK K++ G
Sbjct: 220 EHLKKDGGKDGNKDEAEEEEVSEADKKVEENKEETPKNKKARSARDRSQGKDKKQDGSKS 279
Query: 309 RLRLPPWLKTTIPTGS 356
R L T P G+
Sbjct: 280 R-EAKSLLNTASPYGT 294
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +3
Query: 279 KLKREKGESERLRLPPWLKTTIPTGSKFNEIKQQLRSLK 395
++K++ GE++ +R W K S+ NE+K ++SL+
Sbjct: 939 EMKQKFGETDNVR-DEWCKKATDAESQINELKSMMQSLQ 976
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 213 EGPNLTDFISEDRPKNWDEYQGKLKREKGESERLR 317
E L D +++ P+NW+ KL G+S RLR
Sbjct: 56 EDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLR 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,155,112
Number of Sequences: 37544
Number of extensions: 408409
Number of successful extensions: 1151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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