Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11o18
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   2.6  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    25   3.4  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   6.0  

>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 166 IDQSEFIHFITI-PINYSR--ISTTAGPLVIRKQHLKPLIPFKIYIKN 32
           ID  E     T+ P++YS+  + T    LV   QH  P+I   IY  N
Sbjct: 356 IDYMEKYRDFTVDPVSYSKSDMQTFFSDLVSNHQHYVPIIDAAIYAAN 403


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 406 FFFIHTNLLICKSY*C*KTHYNMNIWCT 323
           FFF+   +  CKSY   K+++  + W T
Sbjct: 144 FFFLFMGITECKSYERLKSYFRKHYWPT 171


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 334 IWCTHVSFVFCFVKLCEFF 278
           ++CT     F F +LCEF+
Sbjct: 313 VYCTEEQAYFLFSQLCEFY 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,333,926
Number of Sequences: 5004
Number of extensions: 21375
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)