Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11o18
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0275 - 20300994-20301150,20301582-20301670,20302779-203029...    29   1.4  
01_01_1185 + 9437432-9437678,9437800-9437902,9438121-9438151,943...    27   7.6  

>01_05_0275 -
           20300994-20301150,20301582-20301670,20302779-20302937,
           20303015-20303255,20303453-20303569,20304804-20304866,
           20305009-20305118,20306418-20306495
          Length = 337

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = -2

Query: 196 VSFKLFAHMLIDQSEFIHFITIPINYSRISTTAGPLVIRKQHLKPLIPF 50
           VS KLF H L   S  ++   I +NYS  S TA   V   Q++ P++ F
Sbjct: 73  VSLKLFVHALCGMSAAMNISCIGLNYS--SATAASAV---QNIMPVLTF 116


>01_01_1185 +
           9437432-9437678,9437800-9437902,9438121-9438151,
           9438268-9438363
          Length = 158

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 242 SAPVIISRDANRK-EFTQFNKTKNKTNMCTPNVHVIMCFL 358
           + PV+ + D  R+  F  F   + +  MC  NV ++ CFL
Sbjct: 4   NVPVMSACDREREVSFASFGLKEQRQRMCLWNVPMMECFL 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,128,682
Number of Sequences: 37544
Number of extensions: 99984
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)