Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11o17
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.38 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   0.66 
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    27   3.5  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   6.2  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   8.2  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 311 TI*NYAITITVVLCNFRFYYVIDNVVFFK 225
           +I N+ I+I V+  NFR YY +DN+   K
Sbjct: 193 SIENFGISIHVITKNFREYYKLDNIEHVK 221


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 180 ILLNFIAVMFDYQIYFKEYNIIYDVVEA 263
           ++L F A + DY+++F+ Y  + D+V A
Sbjct: 563 VILRFFAYLPDYRLFFRRYTNLVDIVLA 590


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/83 (25%), Positives = 38/83 (45%)
 Frame = +1

Query: 334 KMALPVAQPAEVLRAWQKDDQYEKQLADSISKLLPLQHGSKAIPISSLLYKSFTTLKDLQ 513
           +M +   Q  E  RA   D  +   L+D+I  L      +++IP    ++    T++  +
Sbjct: 560 EMGIDQVQTKEAPRAPMSDKNF---LSDAIRHL-----NNESIPTGLPVFSGPMTIRIHE 611

Query: 514 TLGEEYSGIVQVDDSYHKLPSYY 582
             G  Y  +V++ DS+ KL   Y
Sbjct: 612 ADGTPYEHVVELKDSFTKLDIQY 634


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 517 LGEEYSGIVQVDDSYHKLPSYYARLASVLLSTFGENLTRRFVNH 648
           +GE  S  ++V +  +KLP Y A++    L T   +L RR+V +
Sbjct: 247 IGEGASSFIRVINDRNKLPIYVAKVFRPPLDT---SLLRRYVRY 287


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 457 AIPISSLLYKSFTTLKDLQTLGEEY 531
           A P+  L+Y   T+L D Q L EE+
Sbjct: 63  AFPLGRLVYNFLTSLDDQQALLEEF 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,586
Number of Sequences: 5004
Number of extensions: 53828
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)