Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11o15
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   1.8  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    27   2.4  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   2.4  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    26   5.6  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    26   5.6  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   7.4  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = +1

Query: 229 CLSGRFAFGAEQCPRLSN-----AHDDSCQVLC 312
           C SG     + QC +L+N      H DSC+V C
Sbjct: 415 CASGVCTSASRQCKKLTNFSSLSCHSDSCKVSC 447


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 257 LNNVLVSLTPTMILARYCVI-LSYKIHVSSV 346
           L+ VL+   PT+IL   C++ L+ K+H+S++
Sbjct: 150 LSGVLLISLPTLILLNLCILKLAAKLHLSAL 180


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 286  GR*RDEDIVQLQMQIYLKGTYY*RGRRLMKRDLTAAPALFSFTNTLQY 143
            GR  DE+++++ +   L+G  Y   + ++ RD+  A  L      ++Y
Sbjct: 1130 GRIEDENVLKVYVVQLLEGLAYIHSQHILHRDIKPANILLDHRGMIKY 1177


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -1

Query: 311 HNTWQESSWALERRGHCSAPNANLPERHLLLAGP 210
           H  WQ       RR    A NA L   HLL  GP
Sbjct: 283 HPDWQYKLERARRRALRRAANATLLNSHLLETGP 316


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 256 AEQCPRLSNAHDDSCQVLCHTIV*DPRFQ 342
           +  CP +  A + S Q  C+TI+  P FQ
Sbjct: 66  SNHCPSIQFAQEVSEQYRCYTIIGFPEFQ 94


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 599 NLLIMTGLRKIFQIFIYFFPHLYL 528
           N L+   + KI  +FI+FFP L L
Sbjct: 209 NSLLFHSIDKITSLFIHFFPPLVL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,542
Number of Sequences: 5004
Number of extensions: 49022
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)