Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11o11
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    25   3.3  
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    25   3.3  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    24   4.4  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    23   7.7  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    23   7.7  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    23   7.7  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    23   7.7  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    23   7.7  

>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 163 IGPSPPCARVRFGRSESCVHPPLL 92
           +G SPP     + RSE  V+ PLL
Sbjct: 273 VGVSPPAGNFVYKRSEENVNRPLL 296


>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 158 SFTSLRTGPVWAIGILRSPSTAGGTFLGAITDNTPSEDSRDSTDS 24
           +++S+   P+ A    R     G  F     +++PSE   D TDS
Sbjct: 314 NYSSISAIPIPANSFKRRSKKNGLRFKAGEAESSPSESGSDLTDS 358


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 85  PSWVRLQTTHHLKTAGTPQIQ 23
           P W++L +T  L    TP+IQ
Sbjct: 643 PDWIKLSSTRSLFRFHTPKIQ 663


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 107 SPSTAGGTFLGAITDNTPSEDSRDSTDSAVQP 12
           +PS A GT  G I      EDS D++   ++P
Sbjct: 300 TPSFASGTENGVINVWRLDEDSNDNSMGIIKP 331


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 122 IGILRSPSTAGGTFLGAITDNT 57
           IG +  PS+   T L A+TD T
Sbjct: 7   IGFVGKPSSGKSTMLNALTDAT 28


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 70   IAPRKVPPAVEGERKIPIAQTGPVRKEVKDQSN 168
            I PR  PPA    R++ I  +GP      DQ N
Sbjct: 1745 IVPR--PPAERTGRRVAIIGSGPAGLAAADQLN 1775


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 70  IAPRKVPPAVEGERKIPIAQTGPVRKEVKDQSNGD 174
           ++P K P   E E  +PI   GP ++ +  +SN +
Sbjct: 634 MSPTKAPQVFESESNVPI-NNGP-QQSIDKESNSN 666


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 124 RSESCVHP---PLLAAPSWVRLQTTHHLKTAGTPQIQPYSP 11
           +S +  HP   P + +PS    Q  HH  ++ +  + P SP
Sbjct: 97  QSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSP 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,522
Number of Sequences: 5004
Number of extensions: 20817
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)