Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11o08
         (168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    22   9.4  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    22   9.4  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    22   9.4  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    22   9.4  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 144 NEMFIQIYCSLRVNK*YFYLTHLY 73
           + +F+ IY    +NK Y Y+ ++Y
Sbjct: 126 DHIFMPIYKKSELNKGYCYIEYVY 149


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 109 SKQVIFLFNTFVLQS 65
           SKQV  +FNTF++ S
Sbjct: 228 SKQVFDVFNTFLIAS 242


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 147  FNEMFIQIYCSLRVNK*YFY 88
            FNE   ++Y S R N  +FY
Sbjct: 1014 FNEQKHELYLSWRTNASFFY 1033


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 8   EAHAPVDQNEPHKI*LILFGLQ 73
           E+H P+D N+ H++    F  Q
Sbjct: 416 ESHNPIDNNKHHRMLFSNFAAQ 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,490
Number of Sequences: 5004
Number of extensions: 8460
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)