Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11o06
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    30   0.23 
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    29   0.52 
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   6.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.5  
SPBC83.06c |||mitochondrial ribosomal protein subunit L36|Schizo...    25   8.5  

>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 159 NNRIDDLRKIQFENRRLTAILKSSELHRLDK 251
           +N I DL+K    N++L A+LK  ELH++ K
Sbjct: 95  DNNISDLKKNLHSNKKLEAVLK-EELHQIKK 124


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 275 LKISSTSKFNIQYNLEALDITGTNSDDTFKQIAPSTVSPFQSS 403
           L ISS+S  + +Y+  ++ IT  +S D+F   +  T+S   S+
Sbjct: 78  LSISSSSSTSSEYSSSSIPITTVSSSDSFIPSSSQTISASSST 120


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 261 IAKFCPADEAPTILRWRLSVGFQ 193
           + KF  AD+  T++RWR+ +  Q
Sbjct: 411 LRKFLKADDKETLVRWRVRLYIQ 433


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 251  NLAIQQRLLKI-SSTSKFNIQYNLEALDITGTNSDDTFKQI 370
            N  + Q+LL I +S S+    YNL  LD+      D+ K I
Sbjct: 1375 NKDLNQQLLDIETSPSEHTQSYNLNLLDVLQHTLRDSLKDI 1415


>SPBC83.06c |||mitochondrial ribosomal protein subunit
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 59

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 234 APTILRWRLSVGFQIVFSAGRR-SDCF 157
           +P++L W  S GF++  S  +R S C+
Sbjct: 10  SPSLLPWNFSRGFKVKASVKKRCSSCY 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,173
Number of Sequences: 5004
Number of extensions: 38382
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)