Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11o06
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical ...    31   0.47 
AF016420-2|AAB65306.1|  291|Caenorhabditis elegans Serpentine re...    29   2.5  

>AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical
           protein Y40C7B.5 protein.
          Length = 610

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
 Frame = +2

Query: 140 YGPSPVKQSDRRPAENTI*KPTLNRHLKIVGASSAGQNLAIQQRLLKI------SSTSKF 301
           + PSP+++S   P   +I KP+L +   ++   +  QNL +   ++         S + +
Sbjct: 77  FKPSPLQRSIEPPKTPSINKPSLIKKPSVI-LPNPPQNLVVSNLIVSYLQDNSDKSNAGY 135

Query: 302 NIQYNLEALDITGTNSDDTFKQ 367
           +I+YN E    T  N D +F Q
Sbjct: 136 SIRYNKEDKKYTIGNKDVSFNQ 157


>AF016420-2|AAB65306.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein12 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 38  FLFFIV-INFNSLFCHL*INKSKLIIQSTLI 127
           F FF++ I  NSLF HL   K KL  +STL+
Sbjct: 16  FSFFVIGIVGNSLFIHLIFKKQKLRSRSTLL 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,822,285
Number of Sequences: 27780
Number of extensions: 209321
Number of successful extensions: 457
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)