Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11o06
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.0  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   5.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 32  ICFLFFIVINFNSLFCHL*INKSKLIIQS-TLIHNATYGPSPV 157
           IC+L F V+N  S FC   I + K++  + T +     G +PV
Sbjct: 346 ICWLPFFVVNLWSGFCSQCIWQEKIVFAAVTWLGWINSGMNPV 388


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 364 LECIIRIGSCDVQGFQI 314
           L CI+  G CDV G +I
Sbjct: 37  LHCILDRGHCDVIGKKI 53


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 358 CIIRIGSCDVQGFQIVL 308
           C+++ GS    GFQ+ L
Sbjct: 163 CVMKFGSWTYDGFQVDL 179


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 358 CIIRIGSCDVQGFQIVL 308
           C++++GS    GF++ L
Sbjct: 167 CVLKLGSWTYDGFKVDL 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,913
Number of Sequences: 438
Number of extensions: 2667
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)