Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11n14
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    28   1.1  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   3.4  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    26   4.5  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   5.9  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    25   7.8  

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 363 TDAVESAVQGKPSTPKLADAHVKTITKMTRK 271
           T++ E+  QG  +TP+ A A V T T  TR+
Sbjct: 148 TESFEAFTQGMQTTPQRAGAGVSTATSHTRR 178


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 432 YQVELTLFYRRLTSDNSVERQNAFGL 509
           Y+ +L  F  R TS  +VER+ AFG+
Sbjct: 501 YETQLETFDGRATSALNVERERAFGV 526


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 564 TGVTISEFLTKIRHGVFLSARKHFGVQRCYPT*ADGKIMLVLP 436
           TG  I+ FL++     F S R   G + C+   A+G I+L+LP
Sbjct: 494 TGSIITSFLSR----AFGSIRYSGGRRFCFSALAEGAIVLILP 532


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 426 RYKIESMNELQALIKKYPIICTDAVESAVQGKPSTPKLA 310
           RY+    +EL+  +KKYP+I            P  P LA
Sbjct: 27  RYQSSVSSELEESLKKYPVISNPQDFIVTLDGPDDPDLA 65


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 472 RITALNAKMLSG*QKYTMPYFRKELRNS 555
           R+ ALN K+L G Q+   PY    +++S
Sbjct: 280 RLNALNEKLLQGIQQSHQPYHYTNVKDS 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,899
Number of Sequences: 5004
Number of extensions: 55614
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)