Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11n14
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230...    29   2.6  
03_05_1105 + 30438140-30438350,30438448-30438926                       29   4.6  
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229...    28   8.0  

>05_01_0296 -
           2303344-2303395,2303732-2304180,2304287-2304355,
           2304539-2306546,2311181-2311425
          Length = 940

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 209 HTNVT*SLNVFYCCVLCLNILFVMFL 132
           H N+  SLN+FY  VL   I+F+  L
Sbjct: 201 HQNIRWSLNIFYSLVLAQGIIFICML 226


>03_05_1105 + 30438140-30438350,30438448-30438926
          Length = 229

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
 Frame = +2

Query: 227 IVMPFI----LKHQFQRRPFLVILVIVFTCASASFGVDGLPC 340
           I++PFI    L + +QR P  ++L+ +FT A+ SF V GL C
Sbjct: 65  IILPFIVLCPLYYYYQRHPVNLLLLALFT-AAISFAV-GLTC 104


>05_01_0294 -
           2291175-2291223,2291591-2292039,2292143-2292211,
           2292397-2292449,2292492-2294478
          Length = 868

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 203 NVT*SLNVFYCCVLCLNILFVMFL 132
           N+T SLN+FY  V    I+FV  L
Sbjct: 131 NITWSLNIFYSLVFAQGIMFVTIL 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,415,987
Number of Sequences: 37544
Number of extensions: 316411
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)