Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11n14
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-6|AAY55859.1|  159|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81082-4|CAB03096.1|  176|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U58760-6|AAY55859.1|  159|Caenorhabditis elegans Hypothetical
           protein C27A2.8 protein.
          Length = 159

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 135 KHNKQNVQAQDTTVKYIKRLCNVGMGVEIIKLLCHLS 245
           +HN     + +      + LCN+  G+E+I LL  LS
Sbjct: 119 RHNSDTTTSSECVTTCQQPLCNISHGLELIPLLIILS 155


>Z81082-4|CAB03096.1|  176|Caenorhabditis elegans Hypothetical
           protein F42G4.3b protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 296 FTCASASFGVDGLPCTADSTASVHIIGYF 382
           F C S    +DG+P T D   +VH +  F
Sbjct: 68  FVCFSCKKSLDGIPFTLDKDNNVHCVPCF 96


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 296 FTCASASFGVDGLPCTADSTASVHIIGYF 382
           F C S    +DG+P T D   +VH +  F
Sbjct: 495 FVCFSCKKSLDGIPFTLDKDNNVHCVPCF 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,040,461
Number of Sequences: 27780
Number of extensions: 307592
Number of successful extensions: 712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)