Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11n14
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.6  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   8.4  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   8.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 227 IVMPFILKHQFQRRPFLVILVIVFTCASA 313
           I  PF    +  RR   V++ IV+ C+SA
Sbjct: 148 ITDPFTYPSKMSRRRAAVLIAIVWICSSA 176


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 221 YFYSHTNVT*SLNVFYCCVLCLNILFVMFL 132
           Y + HT+V    + F C  L   I+ ++F+
Sbjct: 388 YTWRHTSVLIGWSAFLCISLVYIIMLIIFI 417


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 336 GKPSTPKLADAHVKTITKMTRK 271
           GK  TP++A+A  KT+  M  K
Sbjct: 143 GKQYTPEVAEAWNKTLDMMFGK 164


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 336 GKPSTPKLADAHVKTITKMTRK 271
           GK  TP++A+A  KT+  M  K
Sbjct: 143 GKQYTPEVAEAWNKTLDMMFGK 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,302
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)