Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11n09
         (115 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    24   3.0  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    23   4.0  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    23   5.3  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    23   7.0  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    22   9.3  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    22   9.3  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 70  YNNKNRIDQGQNYNET*NQRSN 5
           YNN N  + G N N+  N  +N
Sbjct: 613 YNNNNNQNYGNNNNQNYNNNNN 634


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 279

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 28 HCNSAPDLSCFYCCNN 75
          HC     L C+ CCN+
Sbjct: 48 HCRWCGKLFCYNCCNS 63


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 67  NNKNRIDQGQN 35
           NNK+ +DQGQN
Sbjct: 268 NNKDSLDQGQN 278


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 82  KISYYNNKNRIDQGQNY 32
           K S+YN+ NR+ +  N+
Sbjct: 844 KASHYNDDNRVSEEHNF 860


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 19  FMSHCNSAPDLSCFYCCNNLFY 84
           F  +  SAP +  F+ C+ L+Y
Sbjct: 515 FFENYLSAPVILVFFICHKLYY 536


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 19  FMSHCNSAPDLSCFYCCNNLFYI 87
           F+  C S  +L+C Y    L Y+
Sbjct: 713 FVKECRSLYNLACIYSKTRLTYL 735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 306,534
Number of Sequences: 5004
Number of extensions: 2434
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)