Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11n09
         (115 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-4|CAO78723.1|  233|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z82057-3|CAB04860.2|  303|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>Z67995-4|CAO78723.1|  233|Caenorhabditis elegans Hypothetical
           protein M153.5 protein.
          Length = 233

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 1   VNWNADFMSHCNSAPDLSCFYCCNNLF 81
           +N  A F   C + PD +   CC++ F
Sbjct: 59  LNTPAKFAKRCANDPDFALIQCCSSCF 85


>Z82057-3|CAB04860.2|  303|Caenorhabditis elegans Hypothetical
           protein T26H8.2 protein.
          Length = 303

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 103 KVQSFKCKISYYNNKN 56
           KV+SFK KIS Y+N++
Sbjct: 195 KVRSFKTKISAYSNQS 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,706,175
Number of Sequences: 27780
Number of extensions: 14376
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 12,740,198
effective HSP length: 19
effective length of database: 12,212,378
effective search space used: 219822804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)