Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11n08
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 0.96
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces... 28 1.7
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 27 2.9
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 27 3.9
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 5.1
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 6.7
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 25 8.9
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 8.9
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa... 25 8.9
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 28.7 bits (61), Expect = 0.96
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Frame = +2
Query: 260 SGFPAPAPRAHPALSPTERSPAKAG-------LHVNFSDKGEVKERREKFLTAKYGSHQM 418
S P P PR S R P K L NF DKG V ++R T K S
Sbjct: 511 SASPPPVPRLSITRSQVSREPEKPEEIPSVPPLPSNFKDKGHVPQQRSVSYTPKRSSDTS 570
Query: 419 ALIRKRL--AVEMWLYDEL-QKLYEIPTLLADAKKPQK--DVHKFINELLDKA 562
++ L A L + +K+ ++ ++K+ K D K + LLD+A
Sbjct: 571 ESLQPSLSFASSNVLSEPFDRKVADLAMKAINSKRINKLLDDAKVMQSLLDRA 623
>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.9 bits (59), Expect = 1.7
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -1
Query: 597 NSDVC*VLYRVLALSNNSLINLWTSFCGFLASASNV 490
++ C + +V + SL+N+WT F ++++V
Sbjct: 83 STQTCTIAQKVSTMQGKSLLNIWTKSLSFFVTSTDV 118
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +2
Query: 269 PAPAPRAHPALSPTERSPAKAGLHVNFSD-KGEVKERREKFLTAK----YGSHQMALIRK 433
P+ R+ P + + N S +G K++ K L K YG+H +L +
Sbjct: 56 PSKPIRSQPLTPSSSKGAGNEPKSQNSSTTRGSAKKQSSKGLEEKLINSYGTHVESLNKG 115
Query: 434 RLAVEMWLYDE 466
R +E+W Y E
Sbjct: 116 RRLIEIWKYYE 126
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 379 REVPNGEVWQPSDGTDTQA 435
R +PN W+P+DG +T A
Sbjct: 494 RAMPNINCWRPADGNETSA 512
>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 437 LAVEMWLYDELQKLYEIPTLLADAKKPQKDVHKFINELLDKAKTL*RT 580
+A E+W Y + Y I LL D K K+ K+I ++ RT
Sbjct: 91 MAEELWSYFSKKTGYTIHPLLIDFLKRNKEERKYIIGIISNTDERIRT 138
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 454 ALRRAAEALRDTDIASGCQKATKGRPQVYQR 546
A A+EA D D++ K TKGR + QR
Sbjct: 755 AFESASEAESDVDVSVPMLKPTKGRLSIKQR 785
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 269 PAPAPRAHPALSPTERSPAKAGLHVNFSDKGEVKERREKFLTAKYGSHQMAL 424
P P P + + +P RS + + VN +GE+ + F+ + + AL
Sbjct: 37 PPPFPSTNASYAPVIRSCDSSEIMVNSLPRGELPDLENDFIEKRLSNANEAL 88
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -1
Query: 555 SNNSLINLWTSFCGFLASASNV 490
+N+SL N TSF G L+S+SNV
Sbjct: 4 TNSSLDNENTSFVGKLSSSSNV 25
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 269 PAPAPRAHPALSPTERSPAKA 331
P P P++HP ++ SPA+A
Sbjct: 113 PPPQPQSHPNVTVISASPARA 133
>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -2
Query: 149 LQHSTQHYNGYVDDHTL--DTRGSFRGTQRPNASAMRL 42
+ HS H GY DDH + D + +G +R + L
Sbjct: 25 VSHSKSHLEGYDDDHKIAFDPKDLEQGAEREKQPRLTL 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,921
Number of Sequences: 5004
Number of extensions: 39616
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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