Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11n06
         (107 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88311-4|AAB42344.1|  537|Caenorhabditis elegans Udp-glucuronosy...    26   4.1  
AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical ...    25   5.4  

>U88311-4|AAB42344.1|  537|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein28 protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 95  FDIHFIEVMFEISNSVINANTVRFIY 18
           FDI+ +  +F IS   I A ++RFIY
Sbjct: 496 FDIYALFALFYISVGTIIAISIRFIY 521


>AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8a protein.
          Length = 536

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 92  DIHFIEVMFEISNSVINANTVRFIYNFYR 6
           DI+ +  +F I  S I   T+RF+Y F R
Sbjct: 497 DIYTLFALFYIFVSTIIIVTIRFVYKFTR 525


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,385
Number of Sequences: 27780
Number of extensions: 15767
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 12,740,198
effective HSP length: 17
effective length of database: 12,267,938
effective search space used: 220822884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)