Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11n03
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 30 0.41
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 29 0.54
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 28 1.7
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 2.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.8
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 5.0
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 26 6.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.8
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 8.8
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 8.8
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 8.8
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 29.9 bits (64), Expect = 0.41
Identities = 30/103 (29%), Positives = 45/103 (43%)
Frame = +1
Query: 352 ATILEDTIIQIRILDECNSELRIIKTLADIKLLRALKFGIAQPKTADELENIDPKNLECE 531
+T+ ED I ++ +S +R I+ A + L + F + K I K LE E
Sbjct: 200 STVFED--IMSWVVAMSSSTMRPIRHTATVFCLNIMTFLCEKSKELLNEHAIATKQLEKE 257
Query: 532 NYKIYKLDSDRRNIINAITDLYVEMTLNKNYKTLTSFLNSIFD 660
K RN IN + + E+ K TLT++LN FD
Sbjct: 258 E----KRSRVNRNRINELNNSLGEIV--KQQDTLTTYLNDYFD 294
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 29.5 bits (63), Expect = 0.54
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 1/154 (0%)
Frame = +1
Query: 283 EEDTMPVEEYTQPSLSYMSSSMFATILEDTIIQIRILDECNSELRIIKTLADIKLLRALK 462
E+D++ ++E T +L +S+F T+ Q ++ E N + LL+ +
Sbjct: 299 EDDSLELKEITPEALDIGQTSLFT-----TLNQTQVKKEDNKKF----------LLKEIN 343
Query: 463 FGIAQPKTADELE-NIDPKNLECENYKIYKLDSDRRNIINAITDLYVEMTLNKNYKTLTS 639
+ + ELE + PK +N + KL + + I E+ L+K+ K
Sbjct: 344 AKLNEDDIDSELEIEVKPKTTALDNIEKSKLSEENEHGIKGKLKQLAEIKLSKDGK---P 400
Query: 640 FLNSIFDKEHYRIALAENEAKNKLERRELTKQIR 741
F N K R + KL+R +L ++++
Sbjct: 401 FENEFNIKSFNRNLVKRAAVMAKLQRNQLEEELK 434
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 649 SIFDKEHYRIALAENEAKNKLERRELTKQIR 741
S+ D++ Y +L ENEA NK+E L + ++
Sbjct: 1619 SMADEDEYLFSLMENEAFNKVEDAALQQSLK 1649
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 196 MSQKQELSSLYKRSLSQLLQMIPET 270
+S+K LSS++K SLSQL+ + T
Sbjct: 614 ISRKPTLSSMFKSSLSQLMTTVSST 638
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 508 DPKNLECENYKIYKLDSDRRNIINAITDLYVEMTLNKNYKTLTSFLNSI 654
D + EC+NY + D+ N + L+ + K Y+T S N +
Sbjct: 818 DQQRNECDNYSNHYNDNSNDNDNDVFLKLHWSKSAIKKYETKASIFNEL 866
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 508 DPKNLECENYKIYKLDSDRRNIINAITDLYVEMTLNKNYKTLTSFLNSI 654
D + EC+NY + D+ N + L+ + K Y+T S N +
Sbjct: 818 DQQRNECDNYSNHYNDNSNDNDNDVFLKLHWSKSAIKKYETKASIFNEL 866
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 541 IYKLDSDR-RNIINAITDLYVEMTLNKNYKTLTSFLNSIFDKEHYRIALAENEAKNKLER 717
I KL +D + N + L +++K + LNS + E Y IA AENE + + E+
Sbjct: 1189 IKKLKTDMLTKLENTVKYLCEYDSIDKVRNSFFKNLNSFY--EMYSIAKAENEERFEKEK 1246
Query: 718 RELTKQIR 741
R + + R
Sbjct: 1247 RRIMSEDR 1254
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 616 KNYKTLTSFLNSIFDKEHYRIALAENEAKNKLERRELTKQ 735
K ++L LNS+ + H R+A+ E +E EL Q
Sbjct: 236 KGMESLEIMLNSMKSENHQRMAMLEENHARVMETAELQHQ 275
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 620 FLLSVISTYKSVMALMIFLLSESSLYIL 537
FL+ ISTY + A++IFLL +++
Sbjct: 224 FLIKSISTYIACFAMLIFLLCNVGSHVV 251
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 187 SSRMSQKQELSSLYKRSLSQLLQMIPETITVTEEDTMPVEEYTQPSLSYMSSS 345
SS +S L+S SLS +++ T T T S SY+SSS
Sbjct: 161 SSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSS 213
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 610 LNKNYKTLTSFLNSIFDKEHYRIALAENEAKNKLERRELTKQIRQLR 750
LN + LN ++D++H +IAL++ L IR L+
Sbjct: 72 LNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLK 118
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +1
Query: 544 YKLDSDRRNIINAITDLYVEMTLNKNYKTLTSFLNSIF---DKEHYRIALAENEAKNKLE 714
YK +S + +IN + D K K +F+ S+F D EH+ + +N N++
Sbjct: 64 YK-NSQKEKVINPVFDPRKPAHELKGNKRDNTFVTSLFTGDDSEHFSQDVGQNLEDNQIS 122
Query: 715 RRELTKQ 735
TK+
Sbjct: 123 NIGTTKE 129
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.4 bits (53), Expect = 8.8
Identities = 34/171 (19%), Positives = 75/171 (43%), Gaps = 3/171 (1%)
Frame = +1
Query: 205 KQELSSLYKRSLSQLLQMIPETITVTEEDTMPVEEYTQPSLSYMSSSMFATILEDTIIQI 384
K+ S L+ + Q+LQ+ E ++D ++E + Y F + +E + +I
Sbjct: 170 KRHFSELFTQK--QMLQLQNENF---KDDYEKIKE--ENKRLYKERKSFLSKIEKSACEI 222
Query: 385 RILDECNSELRIIKTLADIKLLRALKFGIAQPKTADELENIDPKNLECENYKIYKLDSDR 564
L E +S D ++LR + A + D++ +E YK++S+
Sbjct: 223 HDLKESDS-------FKDHEILRLKEERTAAMQAIDDISG----TIETIKSDCYKVESEN 271
Query: 565 RNIINAITDL--YVEMTLNKNYKTLTSFLNSIFDKEHYRIALAE-NEAKNK 708
+ +IN + D+ +V+ + Y + D+E ++ + N+++N+
Sbjct: 272 KGLINEVMDMRNFVQQLEQELYAFEDDYSRIQNDEELLKVGMIHLNKSENR 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,234
Number of Sequences: 5004
Number of extensions: 59109
Number of successful extensions: 164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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