Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11n03
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0123 + 11514565-11514735,11515967-11516500                       30   1.7  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    29   3.0  
07_01_1069 - 9493001-9493176,9493269-9493300,9493405-9493499,949...    29   4.0  
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    28   7.0  

>04_03_0123 + 11514565-11514735,11515967-11516500
          Length = 234

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 168 RHNLYGQFENVTETGTKLLVQEVFVAI 248
           RHN +G+ + +T+T T +  QE F+A+
Sbjct: 99  RHNPFGELKRLTQTSTVVAYQECFLAL 125


>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
            7782225-7782324,7782720-7782801,7782928-7782940,
            7783621-7783681
          Length = 1433

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = +1

Query: 304  EEYTQPSLSYMSSSMFATI--LEDTIIQIRILDECNSELRIIKTLADIKLLRALKFGIAQ 477
            E+Y +PS+++ SS+ F +I  LE    ++  L    S L+ + +L  IK +R      + 
Sbjct: 1197 EQYDEPSITFQSSANFTSIKFLEFRDSKVMYLP---SSLKNLSSLERIKFVRIPNLS-SL 1252

Query: 478  PKTADELENIDPKNLEC 528
            P   + ++ I+ ++ EC
Sbjct: 1253 PDFPNSIQQIEIQDCEC 1269


>07_01_1069 -
           9493001-9493176,9493269-9493300,9493405-9493499,
           9493623-9493898,9493976-9494039,9498048-9498113,
           9498283-9498413,9499722-9499859,9499964-9500079,
           9500166-9500331,9500435-9500548,9500609-9500692,
           9500995-9501073,9501134-9501337,9501999-9502096,
           9502187-9502284,9502359-9502495,9502606-9502824,
           9503541-9503743,9503856-9504005
          Length = 881

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 303 NRHCIFFSY--CYCLWYHLQQLRQRPLV 226
           N  C+F SY  C  +WYH + +++R L+
Sbjct: 359 NPVCLFISYYGCCAIWYHFKDIQRRFLL 386


>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
            26699321-26699416
          Length = 1515

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +1

Query: 361  LEDTIIQIRILDECNSELRIIKTLADIKLLRALKFGIAQPKTADELENIDPKN-LECENY 537
            LE    QI ++ + N EL     LA+  L   L   + + K       ++  N LE +N 
Sbjct: 749  LEQKFEQISVMQKNNEELE----LANSNLQNELAM-VQEQKNEAVASTVELGNKLEEQNQ 803

Query: 538  KIYKLDSDRRNIINAITDLYVEMTLNKNYK 627
            +I  L     N+  A TD+Y E+T+ +  K
Sbjct: 804  QISNLQEAVENLEAAKTDMYNELTVCQEEK 833


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,471,941
Number of Sequences: 37544
Number of extensions: 321504
Number of successful extensions: 754
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)