Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11m22
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    33   0.049
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   1.8  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    26   4.2  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    26   5.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   7.4  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   9.7  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   9.7  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   9.7  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    25   9.7  

>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 364 VKGLNEEAVKTSLTNCGLPGQNPVIVPQY 450
           VKG NEE +K    N GLP  +P++  +Y
Sbjct: 210 VKGRNEECMKILTRNAGLPADHPIMQKEY 238


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 221 NRIFGSDRRKFWMTVESRRLTPELSLISTANQR 319
           NRIFG  RR F   ++ R++   + ++S + +R
Sbjct: 456 NRIFGKIRRSFKRILKPRKINKTVKIMSNSQRR 488


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 331 EWLEFLSELCEVKGLNEEAVKTSLTNCGLPGQNPVIVPQY 450
           +++E      +    NEEA KTS+    L  +NP  +P Y
Sbjct: 57  QYVELEKHYVDNHSSNEEASKTSIDGESLVNENPCKLPFY 96


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 89  ILKLSGKTLFQQWVTRSKLPWTISSLSSASYLRTKEMVL 205
           +L  +G+TL+ Q V  +K   +I S S  SYL   +++L
Sbjct: 531 LLNAAGQTLYTQDVHTTKGTLSIESFSRLSYLLEVQILL 569


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 110 TLFQQWVTRSKLPWTISSLSSASYLR 187
           +L    VT S L WT +S+S   YLR
Sbjct: 334 SLLAAGVTNSLLEWTNTSVSDKEYLR 359


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 115 ISTMGDEEQATLDNQFIEFSKLFENKRDGTTITLYQSDFWFRQAKVLD 258
           I+ MG     +L + +  F+K  EN  +G  +       W+R+A + D
Sbjct: 19  IAKMGTLTADSLGSMWNVFTKCAENLENGRRLENISWRLWYREAMMSD 66


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 20  NYLYMYFIKIFLIIFGDQHNQ*YI-LKLSGKTLFQQWVTRSKLPWTISSLSSASYLRTK 193
           +Y   +F +  L++ G +HN   I    SG  L    + RS   W I+SLS      TK
Sbjct: 84  DYHSPWFRQETLVLEGHEHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -2

Query: 324 IYL*FAVLIKDNSGVNRRDSTVIQNFRLSEPKIRLV 217
           +YL  +++ + N G ++    ++Q + +  PK+RLV
Sbjct: 364 LYLKSSIVEETNDGYSQAPEQLLQRYVVVPPKLRLV 399


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 159 LIVQGSLLLVTHC*NKVLPLNFKMYYWLCWSP 64
           L VQG    VT+    V+P+N  + Y   WSP
Sbjct: 240 LQVQGIFHPVTYILAIVVPINIFLNYLFVWSP 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,587
Number of Sequences: 5004
Number of extensions: 45120
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)