Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11m22
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590...    29   2.5  

>04_04_0827 - 28457858-28458028,28458513-28458669,28458984-28459083,
            28459204-28459231,28459321-28459396,28461276-28461355,
            28461642-28461805,28461897-28462056,28462154-28462277,
            28462901-28463941,28464141-28464259,28464512-28464823,
            28465222-28465425,28466068-28466751,28467301-28467474
          Length = 1197

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +2

Query: 482  KRCLFDIQNHIFNII--LPYIK-QLSTFLLRDMLFVTFRLFFKCIFV 613
            K+C+F ++ H  +I+  L ++     TFLL D+ F+TF   +  I +
Sbjct: 1025 KKCIFFVKKHYHSIVISLGFVDINKPTFLLPDIKFITFYQHYNSISI 1071


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,258
Number of Sequences: 37544
Number of extensions: 234258
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)