Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11m22
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical pr...    34   0.10 
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    29   2.9  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    29   2.9  
Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical ...    28   5.1  

>U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical
           protein C32E8.3 protein.
          Length = 180

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +1

Query: 202 TTITLYQSDFWFRQAKVLDDRRITTIDTGVIFNKYS--KSEINYDEWLEFLSELCE 363
           T +T    D W + A VLD++ IT   TG+ F+K +  K +  +DE  + L+ + E
Sbjct: 30  TEMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSKVTGPKKKATFDETKKVLAFVAE 85


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
           protein 68 protein.
          Length = 5079

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 337 LEFLSELCEVKGLNEEAVKTSLTNCGLPGQNPVIVPQYRDYFLTYKP 477
           L+ LS LCE  G+   + +  +T   LPG++ ++    RD+  +  P
Sbjct: 488 LDVLSSLCEGNGMAVRSSQNLITQYLLPGKDLLLQTSMRDHVSSMMP 534


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
           protein.
          Length = 5071

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 337 LEFLSELCEVKGLNEEAVKTSLTNCGLPGQNPVIVPQYRDYFLTYKP 477
           L+ LS LCE  G+   + +  +T   LPG++ ++    RD+  +  P
Sbjct: 609 LDVLSSLCEGNGMAVRSSQNLITQYLLPGKDLLLQTSMRDHVSSMMP 655


>Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 146 VACSSSPIVEIKSYRLILRCTIGCAGRQK*SKKSL*NTCINNYKTFNQ 3
           ++C+S PI        +L+C  G  G+   SK+ L N  +   K ++Q
Sbjct: 1   MSCTSKPIDNCTYCVNVLKCVFGHFGKSVKSKRQLGNKLVATCKRYSQ 48


>AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 146 VACSSSPIVEIKSYRLILRCTIGCAGRQK*SKKSL*NTCINNYKTFNQ 3
           ++C+S PI        +L+C  G  G+   SK+ L N  +   K ++Q
Sbjct: 1   MSCTSKPIDNCTYCVNVLKCVFGHFGKSVKSKRQLGNKLVATCKRYSQ 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,843,500
Number of Sequences: 27780
Number of extensions: 244177
Number of successful extensions: 663
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)