Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11m20
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88... 33 0.28
10_08_0591 + 19042704-19043063,19043171-19043311,19043592-190435... 31 1.1
08_02_0174 + 13769487-13770352,13770357-13770408,13770438-137707... 31 1.1
01_01_0887 + 6978869-6979053,6979183-6979558,6979651-6979734,697... 30 1.5
02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823,117... 30 1.9
02_01_0061 + 442288-442411,442445-445498,445630-446000 29 3.4
11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203... 29 4.5
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 29 4.5
09_06_0008 - 20168429-20170054 28 5.9
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 28 7.8
01_06_0534 + 30057933-30058290,30058472-30059454 28 7.8
>03_01_0111 +
884501-884970,885069-885147,885530-885574,885838-885903,
886362-886420,886626-886701,886825-886956,887046-887153,
887679-887733,887822-888042
Length = 436
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 256 PFSSSNNAKRHAPASPNGKINKNKEKYLQSDASKYLQGWAQKMKHPQKQIPVRTPAPKPG 435
PF + ++R SP + + SDA+ + A + +PV PAP PG
Sbjct: 67 PFGLLHASRRSLSTSPRSNDELDASAEVLSDAASSVSVPADVLADAAASVPVSAPAPFPG 126
Query: 436 EV 441
EV
Sbjct: 127 EV 128
>10_08_0591 +
19042704-19043063,19043171-19043311,19043592-19043597,
19043652-19043747,19044618-19044698,19045210-19045296,
19045612-19045667,19045866-19045902
Length = 287
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 249 SQVHSVRLRPKFEHYLEIGMVAEGKAKTYSRVGAFLDWWYIR 124
+ V+ VRLRP+ A A R+ FL WW +R
Sbjct: 31 NSVNGVRLRPQRSRQPRRAAAAAATASLVLRLALFLSWWEVR 72
>08_02_0174 +
13769487-13770352,13770357-13770408,13770438-13770705,
13770745-13771022,13771049-13771486
Length = 633
Score = 30.7 bits (66), Expect = 1.1
Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Frame = +1
Query: 166 GFGFAFGNHADFQVMFE--------LGPQTNTMNLTGQPFSSSNNAKRHAPASPNGKINK 321
GF FAF N F M E L T + GQP SS N K A + G
Sbjct: 343 GFAFAFQNQLSFNKMIETQLVQLASLVLANETRRILGQPDSSLENVK--AITTRGGTNGI 400
Query: 322 NKEKYLQSDASKYLQGWAQKMKHPQKQIPVR-TPAPKPGEVPNLEDSMVELVK 477
+KE A K +Q + PQ+ R P P+ P++++ V+
Sbjct: 401 SKEAPSNDSADKEVQ---PEKTVPQECCDTRLLPFPQRSRKPSVDEQFARFVE 450
>01_01_0887 +
6978869-6979053,6979183-6979558,6979651-6979734,
6979838-6979903,6980938-6981007,6981333-6981718,
6982114-6982154,6982661-6982757
Length = 434
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 220 GPQTNTMNLTGQPFSSSNNAKRH-APASPNGKINKNKEKYLQSDASKYLQGWAQKMKHP 393
GP +++ L+ +P SS + RH + KI+++ + L +DA+ YL Q + P
Sbjct: 82 GPDSSSAKLSSEPDGSSADRPRHFVELARAMKISQDTHESLATDAANYLCSQIQNLLAP 140
>02_01_0170 -
1174224-1174321,1174429-1174588,1174673-1174823,
1175005-1175156,1175647-1175768,1176773-1176785
Length = 231
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 292 PASPNGKINKNKEKYLQSDASK--YLQGWAQKMKHPQKQIPVRTPAPKP 432
PA P+ K K K+ D + + W ++ + K PV APKP
Sbjct: 11 PAVPSAKAEPLKSKWADEDVEEDDVKESWEEEEEEKPKPPPVEKTAPKP 59
>02_01_0061 + 442288-442411,442445-445498,445630-446000
Length = 1182
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 99 AIATICGLFEYTTNQERHRLESR 167
A+ TI G++EY T +E H + S+
Sbjct: 29 AVGTIIGIYEYKTTRESHSMNSK 51
>11_01_0268 -
2029007-2029464,2029521-2029615,2030815-2031077,
2031154-2031279,2031404-2032996
Length = 844
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 204 LEIGMVAEGKAKTYSRVGAFLDWWYIRISHR**RW 100
L+IGM +EGK + S FL W +SH +W
Sbjct: 440 LDIGMFSEGKERIRSESLKFLQIWRSSVSHITIQW 474
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 367 GWAQKMKHPQKQIPVRTPAPKPGEVPNLEDSMVELVKNDKGEYE 498
G ++ + P++Q P R+P P+P V L ++ + K E E
Sbjct: 9 GDRRRRRQPRRQSPARSPPPRPDHVALLGKALTAVDVEAKEEVE 52
>09_06_0008 - 20168429-20170054
Length = 541
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -1
Query: 524 IFP-GLGCFISYSPLSFLTSSTIESSRLGTSPGLGAGVLTGICFWGCFIFCAQPWRYLLA 348
IFP LGC +S L + E +RL G+G G GI +G + W +
Sbjct: 332 IFPHSLGCAVSTRVGHELGAGRPERARLVARVGVGLGAALGIVAFGFAVSVRAAWARMFT 391
Query: 347 SD 342
++
Sbjct: 392 AE 393
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 220 GPQTNTMNLTGQPFSSSNNAKRHAPASPNGKINKNKEKYLQSDASKYLQGWAQKMKHPQK 399
G T L + S + ++P+ +G I+ KE YL+ +LQ ++K PQ
Sbjct: 24 GRNEETGELGASWYFSRKEIEENSPSRRDG-IDLKKESYLRKSYCTFLQDLGMRLKVPQV 82
Query: 400 QI 405
I
Sbjct: 83 TI 84
>01_06_0534 + 30057933-30058290,30058472-30059454
Length = 446
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 8 KFWCS--KWC*YYSHLDFCFLLGHAR*SYLRNCHRYYLWLIRIYHQSRKAPT 157
+FW + K Y++ F L H R SY N R Y+W+ + Y+ A T
Sbjct: 319 QFWYNFLKRLKYFTDRHFRLLGEHPRDSYKSNRGRTYIWMHKNYYGDGDAAT 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,773,068
Number of Sequences: 37544
Number of extensions: 386609
Number of successful extensions: 1342
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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