Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11m19
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    30   2.0  
U41508-6|ABS19459.1|  323|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U41508-5|AAG00025.2|  511|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF326938-1|AAG49388.1|  511|Caenorhabditis elegans XG314 protein.      29   4.6  
Z82288-8|CAB05329.3|  328|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z81102-5|CAB03205.3|  328|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
           protein K02F6.4 protein.
          Length = 1193

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 152 RKFTKNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNMLNESRPVMLTLMD 310
           RKF++N  P  PR++  +  + +K +I    ++   I+  LN+    M  L+D
Sbjct: 10  RKFSQNHSPPPPRRSSALHDAIDKLSIVARVTNAITIQKGLNDKSMKMANLLD 62


>U41508-6|ABS19459.1|  323|Caenorhabditis elegans Hypothetical
           protein W01C8.5b protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 164 KNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNM 271
           K    G+P   G ++ S E+ N      D++ IKN+
Sbjct: 92  KKNTDGKPMARGVLKGSAERTNFTFQLGDVEHIKNL 127


>U41508-5|AAG00025.2|  511|Caenorhabditis elegans Hypothetical
           protein W01C8.5a protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 164 KNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNM 271
           K    G+P   G ++ S E+ N      D++ IKN+
Sbjct: 280 KKNTDGKPMARGVLKGSAERTNFTFQLGDVEHIKNL 315


>AF326938-1|AAG49388.1|  511|Caenorhabditis elegans XG314 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 164 KNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNM 271
           K    G+P   G ++ S E+ N      D++ IKN+
Sbjct: 280 KKNTDGKPMARGVLKGSAERTNFTFQLGDVEHIKNL 315


>Z82288-8|CAB05329.3|  328|Caenorhabditis elegans Hypothetical
           protein M02B1.1 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = -1

Query: 376 ILFRERSIQWIDVLWIQISSVRIHKC*HYRPTLVKHVFNSLYIRS*QFNVIFFTRALYFS 197
           +L+   SI W+ VLW  +  + +  C  Y   + K+   S+ I       IF    +   
Sbjct: 227 LLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSF 286

Query: 196 CFSWSSWPLIFCEFSY 149
            F   +  +IF  F Y
Sbjct: 287 TFLLGASLVIFSIFLY 302


>Z81102-5|CAB03205.3|  328|Caenorhabditis elegans Hypothetical
           protein M02B1.1 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = -1

Query: 376 ILFRERSIQWIDVLWIQISSVRIHKC*HYRPTLVKHVFNSLYIRS*QFNVIFFTRALYFS 197
           +L+   SI W+ VLW  +  + +  C  Y   + K+   S+ I       IF    +   
Sbjct: 227 LLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSF 286

Query: 196 CFSWSSWPLIFCEFSY 149
            F   +  +IF  F Y
Sbjct: 287 TFLLGASLVIFSIFLY 302


>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
           protein F59F3.5 protein.
          Length = 1199

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
 Frame = +2

Query: 56  MGNQNIKAAQNKFCDKQMSAGD-VGTFSNGSNIRKFTKNQGPGRPRKTGKIQSSR-EKDN 229
           +  +N  A  ++  +  +  G  V T  NG   +  TK  G     +T  ++S + E   
Sbjct: 381 INKKNYTAKWSRLYNSTVEGGQQVETIRNGFFRQITTKTSGRNVFLETLNLKSPKIEMSG 440

Query: 230 I---KLSRSDI-QRIKNML---NESRPVMLTLMDPNRTNLYPQHIYPLNGSLS 367
           I    +S  DI Q++K ++   N+     LT+ DP   N+  Q   PLN +LS
Sbjct: 441 IYVLSISNMDIVQQVKWIIEVENDEPNAQLTIRDPLTLNISNQLFLPLNTNLS 493


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,784
Number of Sequences: 27780
Number of extensions: 327963
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)