Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11m15
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    29   0.66 
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    28   1.2  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    27   2.0  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    27   3.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   3.5  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    26   4.7  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   8.2  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.2  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = +3

Query: 459 SKNYFRLSSIHMSLEALELFQKNYLQSMERLPSRWENQRNLAMLH*NERYQET*RQKIAL 638
           SK  F L  +   L   E ++K  ++ M +L  R  ++R++A     ++Y E+  QKI L
Sbjct: 119 SKISFLLQQLEFKLSVEEQYRKG-IEKMAKLYEREHDRRSIAEAE--KKYVES-AQKITL 174

Query: 639 IKQLL 653
           +KQ L
Sbjct: 175 LKQAL 179


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 175 DFSDDEETEINIHQELLKKPIREQITWNTH---YLQPEREDEKTLIKKADDLTERK 333
           + + DEE      +E+L+KP+ +      H    L+ E +++KT +  +D +  +K
Sbjct: 174 ELNSDEEDAEQAEEEILEKPVPKDEVAEKHSKDKLKKEEKEKKTAVDVSDSVNGKK 229


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +1

Query: 154 FINSFRFDFSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDLTERK 333
           F++SF+ DF  D E  +N+ +  L   I  ++      L P   D    I++ D+  +  
Sbjct: 131 FLDSFKTDFEVDREVLLNVAKTSLSTKISSKV---VESLAPAVVDAILTIRRPDEPIDLH 187

Query: 334 VLLTVELTNK 363
           ++  +++ N+
Sbjct: 188 MVEIMKMQNR 197


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 211 HQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDLTERKVLLTVELTNKLKLTKK 381
           H E +  PI+  +T       PE E+ + +  + DD   +   +  E   K K TKK
Sbjct: 198 HSEFISYPIQLVVTREVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKK 254


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 512 VISKELPTIDGKIAVAVGKPEKSCYAALEREISRDIKAENCSNKTIA 652
           V+S ++ T D  ++ A  + EKS     ++    D+K +  SN+TIA
Sbjct: 68  VVSIDINTEDSSLSPAKQENEKSPEGIEQKYQEEDLKDDKKSNETIA 114


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 90  IYVKFQILKGKKSLFNQNIV 149
           +++ FQIL+G K L  QNI+
Sbjct: 259 LFIMFQILQGLKYLHEQNII 278


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 181 SDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDLTER 330
           S+D+E+ +   + + K P RE  +  T  +  E E+E  +  +A   +E+
Sbjct: 42  SEDKESNLTSSENIGKNPERELNSDGTDRIIEEEEEEDDIENEASSFSEQ 91


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 238 REQITWNTHYLQ--PEREDEKTLIKKADDLTERKVLL 342
           RE + W   ++   P+++  + L + A D TER+VLL
Sbjct: 236 RELLKWTVEFMSVAPKKQLIRLLAEYAKDDTERQVLL 272


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 268 LQPEREDEKTLIKKADDLTERKVLLTVELT 357
           L P  E EKT I + D+ T+R VL+ + LT
Sbjct: 440 LLPISELEKTRILQVDNPTDRLVLVLIWLT 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,721
Number of Sequences: 5004
Number of extensions: 50155
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)