Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11m15
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0053 + 397406-397609,398483-398561,398648-398742,399289-39...    31   0.69 
03_01_0453 - 3471656-3471819,3472416-3472580,3473062-3473145,347...    29   3.7  
01_07_0105 - 41104655-41104851,41105818-41107150                       29   4.9  
11_06_0289 - 21969248-21973516                                         28   6.4  
02_02_0335 + 9063749-9064216,9064846-9064890,9065351-9065470,906...    28   8.5  
01_06_1378 + 36788283-36789734                                         28   8.5  
01_05_0132 - 18446105-18446197,18446281-18446372,18446684-184467...    28   8.5  

>02_01_0053 +
           397406-397609,398483-398561,398648-398742,399289-399393,
           399496-399575,399832-399922,400021-400128,400529-400615,
           400862-400972
          Length = 319

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 558 RWENQRNLAMLH*NERYQ-ET*RQKIALIKQLLLDKASLDTTSIELRIIILKPV 716
           RW   + +AM H   RYQ +  R +IAL K   +D  + +T  +E ++++L PV
Sbjct: 226 RWAIMQGIAM-HLQNRYQRQRLRTRIALGKAKRMDVVAGETAGVEGQLLLLYPV 278


>03_01_0453 -
           3471656-3471819,3472416-3472580,3473062-3473145,
           3473304-3473375,3473496-3473574,3473894-3473990,
           3474064-3474116,3474257-3474386,3474464-3474498,
           3476108-3476212,3476759-3476833,3477671-3477799,
           3477918-3478097,3478737-3478820,3478943-3479059,
           3479170-3479242,3479316-3479437,3479519-3479641,
           3479917-3479989,3480218-3480396,3480699-3480837,
           3481105-3481259,3481570-3481875
          Length = 912

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 447 LLKRSKNYFRLSSIHMSLEALELFQKNYL 533
           L KR+  YFR+SS H    A EL+Q  ++
Sbjct: 412 LQKRASRYFRMSSEHTMKVAEELYQAGFI 440


>01_07_0105 - 41104655-41104851,41105818-41107150
          Length = 509

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 181 SDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDLTERKVLLTVELTN 360
           S DE T++ + +E +K    E I      +  E E+EK++    DD  +     T+EL  
Sbjct: 404 SRDEITKVEVEREEIKVEHEEII------VSQETEEEKSIAVSKDDDGQSDGKQTIELKE 457

Query: 361 KLKLTKKDSQ 390
            +  TK D +
Sbjct: 458 AMTATKTDEK 467


>11_06_0289 - 21969248-21973516
          Length = 1422

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/80 (25%), Positives = 36/80 (45%)
 Frame = +1

Query: 175 DFSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDLTERKVLLTVEL 354
           D  DDEE  I++H++  ++ +RE  T N      + +++  L+ +    T    L    +
Sbjct: 535 DDDDDEEEPIHLHEDQYEQILREVFTKNA---SSKAQEQDKLVAEQATKTAATTLDEERI 591

Query: 355 TNKLKLTKKDSQRIL*VHET 414
              +   K+D  R L   ET
Sbjct: 592 KQMINEAKQDVLRELRGRET 611


>02_02_0335 +
           9063749-9064216,9064846-9064890,9065351-9065470,
           9066025-9067527
          Length = 711

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 226 KKPIREQITWNTHYLQPEREDEKTLIKKADDL 321
           K   +E+I  + H LQ E EDE+ L + ++DL
Sbjct: 308 KNKDKEKIAADIHSLQDELEDERRLRRHSEDL 339


>01_06_1378 + 36788283-36789734
          Length = 483

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 662 FVQKQLFY*SNFLPLCLLISLVLMQHSKISLVFP 561
           ++QK LF+ +  +P+  L+SL++   S+   +FP
Sbjct: 68  YIQKGLFFPAPDVPMASLVSLLMSSLSRALAIFP 101


>01_05_0132 -
           18446105-18446197,18446281-18446372,18446684-18446783,
           18446855-18447046,18447216-18447536,18447848-18447943,
           18448006-18448098,18448181-18448306,18448358-18449053,
           18449130-18449162
          Length = 613

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/54 (20%), Positives = 27/54 (50%)
 Frame = +3

Query: 366 ETDKKR*PTNFVST*NSLAVNNNPIYFLLKRSKNYFRLSSIHMSLEALELFQKN 527
           E  K++    ++S   +    N  I+  + R+KN++ L+ +H+    ++L   +
Sbjct: 496 EISKRQLEKGYISRITNQIAQNEQIFIPINRNKNHWYLAVVHVKQRQIQLLDSS 549


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,665,264
Number of Sequences: 37544
Number of extensions: 270922
Number of successful extensions: 689
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)